BAC Information

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BAC

Clone NameMSMg01-463B14
Chromosome10 (Build37)
Map Location 9,550,125 - 9,550,729
singlet/doubletsinglet
Overlap geneStxbp5
Upstream geneSash1, EG666625, LOC666636, E130306M17Rik, LOC666658, LOC620417
Downstream geneLOC100039238, LOC665110, 9130014G24Rik, Rab32, EG382450, Grm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463B14.T7 (MSMg01no463_b14.b1)MSMg01-463B14.TJ (MSMg01no463_b14.g1)
ACCAG547830AG547831
length736792
length of high quality
(start - end)
607 (55 - 661)154 (83 - 236)
definitionCHROMAT_FILE: MSMg01no463_b14.b1 PHD_FILE: MSMg01no463_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:21 2005CHROMAT_FILE: MSMg01no463_b14.g1 PHD_FILE: MSMg01no463_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGGAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGA
TCCGCGGAATTCTTTGTATATTCCATCCTTAAAACATAATACTGATTTTT
GTGGATGTGAACCTCCATTTCAGTTTTAATCCAGTGACCCTGCACAGGAT
AAAAACTCCCATTTGTACTATTGGTAAACTGTTGACTGCATGGATGAGAA
TGCTCTAGAAACTTAAAACACCTAGAAAATTCAGACATTACTTCCTACTG
AGGACGTCTATTGATTGTGACTGTCTAGCATCTCCACTTCCTCAGGGAAT
CAACTGACTCTGGTGAAGCTGACAATGACTTTAACTCCCATCCAATGGTA
CATCACCCCAGCCCAGGGCTACAGTGCAGCCTGTGGGGGCCCTGACCCAA
CAAATCACTTAAGCAAGATGATGGCTTCAAAATAAGAACAGCCATGGCAA
GACTGTCAAAAATTCTCTTCTTAATAAAAGCTCTTCTGTCACAGCAGAAA
AGCAAACCAAAAAGGAGCAGCAGAGCTTAACCTAGTTTGCTGCACAAAAC
GTTCTCTGCAGATAAATGACTTTGCAAAGGAAATTTGTGAAGCAACATTC
TGCTCAGTTTCTACATGTTGTTATACACTCGGTAACTCATCTCATCCACT
GTTGAACTAATAAAACTAAGTAGCATAGAAATTATCTTCATAAGAGGTGT
GTGTGTTCCTGTTCACATCTGTATGGGTACATGCAT
TTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGCTGACTTCAACTACA
CGGTGACTTTATGTCAGCCTGGGTTACATAAGAAACATGTTCCACAAGAG
AAAAAGGAGAAGAAAGAGGAGGAGAAAGAGGAGAAAGGGGAGGAGGAAAG
TGGGAGTAAGAAGAGAAAAGGAAGATAGAAGGAAGAGGATAGTGTTTTTT
GTATTGGTTTTTTTTTTGTGTTTTTTGGTTGTTTTTTTAGATGGTGTGAG
TATGAAAGGAGGGAGGAGAGGAAGATTTTTGTATTTTAAAGGAAGAGAAA
AAGAGAAAGAAGAGAAGATTTTTTTTCCCCCCCCTCGACGGGATGTGATC
TACCTCCTTGCAGCTCATCTTATCTCCCCCCCCCTTTTTTTTTTTTCATT
TTTCTCATTTGCTCCTTATCTGTGCAAATTATTCTCTTTATTTTTATTTT
ACTACCACTTATTGGATCTCCATTCCCCTACTTCTCCTATGTATCCAGTA
TTTTTTTTTCTATTCTGTTATTTGTATACTAATTTTATACACATTTTTGT
ATTTGTCTGTATTGTTATTTTTTTATTATTCTTCTTCTCTGACCCAGTAT
TTCCCATTTCCTTTTCTGCTTCTTTCGTCTCCCACTCTATCTTTTTTCTT
TTTTTTTCCTCCGTGTCTCCTTCACTCGACCGTTTGCTCTATTTCTTCTC
CTTCGTTCCTCTTATATCCCTTTCCTCACACTCGTCACCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_b14.b1 MSMg01no463_b14.b1 CHROMAT_FILE:
MSMg01no463_b14.b1 PHD_FILE: MSMg01no463_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:21 2005
         (607 letters)



>mm_chr10_9549923_9550929
          Length = 1007

 Score = 1064 bits (550), Expect = 0.0
 Identities = 592/606 (97%), Gaps = 2/606 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctttgtatattccatccttaaaacataatactgatttttgtggatgtgaacctcc 62
           ||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 203 gaattctttgtatgtttcatccttaaaacataatactgatttttgtggatgtgagcctcc 262

                                                                       
Query: 63  atttcagttttaatccagtgaccctgcacaggataaaaactcccatttgt-actattggt 121
           |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 263 atttcagttttaattcagtgaccctgcacaggataaaaactcccatttgtaactattggt 322

                                                                       
Query: 122 aaactgttgactgcatggatgagaatgctctagaaacttaaaacacctagaaaattcaga 181
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaactgttgactgcacggatgagaatgctctagaaacttaaaacacctagaaaattcaga 382

                                                                       
Query: 182 cattacttcctactgaggacgtctattgattgtgactgtctagcatctccacttcctcag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cattacttcctactgaggacgtctattgattgtgactgtctagcatctccacttcctcag 442

                                                                       
Query: 242 ggaatcaactgactctggtgaagctgacaatgactttaactcccatccaatggtacatca 301
           |||||||| |||||||||||| ||||||||||||   |||||||||||||||| ||||||
Sbjct: 443 ggaatcaagtgactctggtgacgctgacaatgacaaaaactcccatccaatggcacatca 502

                                                                       
Query: 302 ccccagcccagggctacagtgcagcctgtgggggccctgacccaacaaatcacttaagca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccccagcccagggctacagtgcagcctgtgggggccctgacccaacaaatcacttaagca 562

                                                                       
Query: 362 agatgatggcttcaaaataagaacagccatggcaagactgtcaaaaattctcttcttaat 421
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 563 agatgatggcttcaaaataagaacagccatggcacgactgtcaaaaattctcttcttaat 622

                                                                       
Query: 422 aaaagctcttctgtcacagcagaaaagcaaaccaaaaaggagcagcagagcttaacctag 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaaagctcttctgtcacagcagaaaagcaaaccaaaaaggagcagcagagcttaacctag 682

                                                                       
Query: 482 tttgctgcacaaaacgttctctgcagataaatgactttgcaaaggaaatttgtgaagcaa 541
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tttgctgcacaaaacgtt-tctgcagataaatgactttgcaaaggaaatttgtgaagcaa 741

                                                                       
Query: 542 cattctgctcagtttctacatgttgttatacactcggtaactcatctcatccactgttga 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cattctgctcagtttctacatgttgttatacactcggtaactcatctcatccactgttga 801

                 
Query: 602 actaat 607
           ||||||
Sbjct: 802 actaat 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)