BAC Information

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BAC

Clone NameMSMg01-463L16
Chromosome10 (Build37)
Map Location 72,636,135 - 72,636,578
singlet/doubletsinglet
Overlap geneLOC432471
Upstream geneLOC100040505, Zwint
Downstream geneLOC544705, LOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463L16.T7 (MSMg01no463_l16.b1)MSMg01-463L16.TJ (MSMg01no463_l16.g1)
ACCAG548312AG548313
length1,728745
length of high quality
(start - end)		---550 (85 - 634)
definitionCHROMAT_FILE: MSMg01no463_l16.b1 PHD_FILE: MSMg01no463_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:15 2005CHROMAT_FILE: MSMg01no463_l16.g1 PHD_FILE: MSMg01no463_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAGCACACCGACCTAGATAGACGCGCACAGACAGAGGAGAATAGACGAG
AGAGNCGGTGCGCGCTCGNGGGCGATCGNTGATGTATCTCGCGTGACAGT
ATGAATGGAGTTNTTGCTTNCTGCNCTCGGTGGCTGCGGTGTGAGCGCTG
CTCCGCAACGAGNTACGCGGACGAGCAAGCGACGCGCAGAAGACTGTCGA
TCTNCCTACTCGTAGACCGACAGACGCGTCTAGAATACGAGAAGATAGCA
GACAGTGTGCATAGCGCCATGCTGCCGGCGGCATGTAGATGCATCTTCAC
GCATACTCGTATTCGCCCATACTACGTAGACTATTGTAGNTGATGTAGCT
ACGTCGTCACGTAATGCAGCGACCCGTACGAATGACAACATACACAGAGC
TGAGTAGTACGGCGGCGGAGTGAAGAGTGAGCCATATTGATCACGTCGAT
TCTGGCCACTCGTGTGCGCGCCCACTGGATAGTACACCATATACTCGCAT
GCGCATGCACGCTCAGCCTAGACGTCTCACCAACTCTATACATGCAGTCG
ATGAGATACATACACGCGCGACGGCGCTAGATGAAGATATAACGCGTACA
TGACATCACGCTGTGAATCAGAGATCGTCGACGACAATATGTCAGACACG
ACATATATGTCTATTAGACGGCGATCCCAGTCGCTGTGTAGAAGATTAGA
CGATAGTGTTGTGAGAGATAGTGGCAGCAAGCGCCACACACGTATANTAC
ATACGTCAGACAATGCGTAAGACGCAGANATATATAGCGTCGGAGAAGAG
TACGCATAATGAGAAGAGCAGGTGCTAAAGCGCGAGATGAGCGTGCGCGA
GATGGAGGANAGAGAATGATAACACGATATAAGCGAGCTCACTNTCGACG
CGCGCGCTCAGACCCGCTCAGCCGCGATTGCGATGAGGCGCTGTCGCTCT
GTATGCGACGCCGNGATGACAAGTGACGCCACACCATCATGAGTCTACAT
GCGTATCACAGTGATGTGCGATGCGTGCGTGCGACGTGGCGCTCATGGAT
CGCGATGTTCTCAAGAGTGTGTATCGTACGTATGAGACCCCACTCCANTA
CANTACGTCCAGAACTCGCTTNTCNGCAGCGATAGTCGCATGTGACCGGA
GCAGCGCGCTGTGGATGAGATGATTCATGAGATCGGACAGTGCCGCAGCA
CTATATCATANTCAATACGTATACACTACGTATATACAACATATATTATG
AATCTTCAAGACATCTCGACTGCGCGAGTACTGTGTGACGACGAGTGACA
TATATACATCGACACAACTGCTCCNCGCTCATTAGCTCACATCGCATCGA
CAAGTTGATAGACTAGGACGATTACGAGCCGCGAGCCGCTGCTGTGTGTG
CGATTGTAGTGACGCGTCTTATCCTACTCAACCGCGACGACCCTCACTCC
TACCTCGCNCCACCANTGCTGTAGCTCATCAAGCGTTGTGTATTCACATA
ACGACATACAAATAAGTGACTGACGATAGAGAGAATGATAACGACCTCAC
GACAGGTAAGAACGAGAGCGAGCGACGCGAGGACTGGTCTGTCTGCGACG
CAGCGTCTCGCANTACACTGCGGAGCATGTACGATCACCGATCGTTCGCT
AGTGAAANGACTCGTAGACTGCGTGCTCGCTTCGTGTCTCGCACTCAGAT
ACGATGAGCGACACGATGACTGTACGNN

CTAATTNNACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATGCCAAACCATGT
GCACTATAAGTATTTTTTAATGAAAACTACAGCCAAGTGCCTTTGCTACA
GAGGTGATATGAAGGAAACTACACCCCTGATAAGCTACTCACATGTTTCT
TTACAGTAGAAAATGCCACATGGTAAGGACTCTGAGGATACGTATTCATT
CAGGGGTAGAGCACTCAGTGTGTTTACGTTAAATTATGTGCTCTCTCTTG
GGGGTCTTTTAGTTAAGGACATTTTGGCTCGTATACACTAGCAAGCATTT
GCTGGAAGGACCCTGATATAGCTGTCTCTTGTGAGACTAGGCCCGGACAC
ATAAGTAGATGCTTACAGTCAGCTATTGGATGGATCACAGGGCTCCCAAT
GGAGGAGCTAGAGAAAGTATCCGTGGAGCTAAAGGGATCTGCAACCCTGC
AGGTGCAACAACATTATGAACTAACCAGTACCCCAGAGCTCTTGACTCTA
GATGCATGTGTATCAAAAGATGGTCTAGTCGGCCATCACTCGAAAGAGAG
GCCCATTGGACAGGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGG
GNCAAAAAGTGGGAATGGGTGGATAAGGGGAGTGGNAATATNTTTTNNTT
TTTTTTNTNTTNNTTTTTTTTTNTTATTTTTTTTTNTTNTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_l16.g1 MSMg01no463_l16.g1 CHROMAT_FILE:
MSMg01no463_l16.g1 PHD_FILE: MSMg01no463_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:15 2005
         (550 letters)



>mm_chr10_72636135_72637084
          Length = 950

 Score =  774 bits (400), Expect = 0.0
 Identities = 427/444 (96%), Gaps = 14/444 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgccaaaccatgtgcactataagtattttttaatgaaaactacagccaagtgccttt 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 444 acatgccaaaccatgtgcactatatgtattttttaatgaaaactacagccaagtgccttt 385

                                                                       
Query: 61  gctacagaggtgatatgaaggaaactacacccctgataagctactcacatgtttctttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctacagaggtgatatgaaggaaactacacccctgataagctactcacatgtttctttac 325

                                                                       
Query: 121 agtagaaaatgccacatggtaaggactctgaggatacgtattcattcaggggtagagcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtagaaaatgccacatggtaaggactctgaggatacgtattcattcaggggtagagcac 265

                                                                       
Query: 181 tcagtgtgtttacgttaaattatgtgctctctcttgggggtcttttagttaaggacattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcagtgtgtttacgttaaattatgtgctctctcttgggggtcttttagttaaggacattt 205

                                                                       
Query: 241 tggctcgtatacactagcaagcatttgctggaaggaccctgatatagctgtctcttgtga 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tggctcctatacactagcaagcatttgctggaaggaccctgatatagctgtctcttgtga 145

                                                                       
Query: 301 gactaggcccgg---------acacataagtagatgcttacagtcagctattggatggat 351
           ||||||||| ||         |||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gactaggccagggcctagcaaacacataagtagatgcttacagtcagctattggatggat 85

                                                                       
Query: 352 cacagggctcccaatggaggagctagagaaagtatccgtggagctaaagggatctgcaac 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  cacagggctcccaatggaggagctagagaaagtatccgtggagctaaagggatctgcaac 25

                                   
Query: 412 cctgcaggtg-----caacaacat 430
           ||||||||||     |||||||||
Sbjct: 24  cctgcaggtgaggtgcaacaacat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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