BAC Information

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BAC

Clone NameMSMg01-463M11
Chromosome10 (Build37)
Map Location 128,482,630 - 128,483,180
singlet/doubletsinglet
Overlap geneEG546487
Upstream geneNaca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733
Downstream geneOlfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463M11.T7 (MSMg01no463_m11.b1)MSMg01-463M11.TJ (MSMg01no463_m11.g1)
ACCAG548350AG548351
length836748
length of high quality
(start - end)		243 (79 - 321)550 (80 - 629)
definitionCHROMAT_FILE: MSMg01no463_m11.b1 PHD_FILE: MSMg01no463_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:19 2005CHROMAT_FILE: MSMg01no463_m11.g1 PHD_FILE: MSMg01no463_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CACAATCTAXXXXXXXXXXXXXXXXXXXXXXTCCTATTTCAAACTCAGCC
GCGGAATCCAGACTCTTCCAGGACATGACATGCCCTTCAGTGTGCACCTT
TAAAGAACGTGCATAATTTTCCTGCCTTATCTTTTGGTTTTTTGAGACAG
GGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGG
CTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGA
TTTTTGGCGTGTGACACCACTGCCCGGCTTCCTGCCTTATCTTACCACTA
TCAAAGCCAGCAAACTTTATCCTACTTTGCTGAAGNCGNAGTTGTTGATG
CTGATGTTGTTTTTTTGTCCCCCCCTCCACTCCTTCTACTGCATTTTCTA
AACCCCTAGTTCTTTCTCCTGACCACTCATCTTCTTTTAGTTCTAATTTA
CCTGCTCGCCACTTCTTTATTTCTCCCTCTCTTTTTCACTGATTTTTCTT
TCATCTTTTCCTTTGGCCTCAGTCTCGTCCTCTGTTCTTCGTTCTTGCTT
TCTTCCTCTCTTCTACTCTCTCTCTCCTTCTTTCAATGCGCTTGTGTCTT
CTCTTTCCCACCTCCCCGTCACTCTCATTCTTTGCTCCCTTTCTCCGATT
CTCTCTCTCCCGTGTGTATTTCGCTCTTCTGTCTGCCCTCCCCTCCGCTT
ATCTTATCACCTTCCTTTTATTCTCTTTTACTATACCGTACCCACCCCTC
CATTTTTGCTCCCTCCTCTGTTTTCTCCGTATACTCTACCGTTCAGTGTC
TTATCTTCTCCCTGTCCTTTCTCTCATTTATCGTCN

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAACTGAACTCTTAATGAA
TGAGTTCCTACTGTGTGCCAAGCTCTCTCTCACTGACTAGGTACCCAATT
AAGAGATTGACTCTAGTGTGAAAGTTGAAGACACATTTCAGCCTATTGAG
TGTTAATGTTATGATCTAAATAAGATTTTTAAACTGAAAGGCAATTGAAT
TACTCAGTTGTCTGAACTAGAATCAACAAATACCATCACAAGGAACGACA
TTTAAACTGAGTCCTGGAAAGTATGATAATTCAAAATAGAAAAGAGGAAT
CAAGATCAAAGGAATATTGCAAATTGGCATGTGAAATTTCAATCCAAGGA
ACTGAAAAAGAAATCTCATTAATTTCCCACAGACCAAATTCACTAAGGAA
AAATAAGAGGAACTATTTTGGTTTCAAACTAAATTAATTCCTCACTTAAA
GTAAATTACACATCCATAGTGTTCGGGCATCTGAAATTGGATCTGATCTA
TGAATTTTTAGCAATTACAATCATATAGAATCTACACTGTAGATAACTGA
TTATGTAGAAATAGAGAAGATTGTATAGGANAACACTCTTTGGTAGAACT
CAAACATTAAATGTTAAAGATCCTCTCACATTTAAATGTTAAAAAAGCAA
AAGGTAATATTTAGAAAAGTAATTAAACTTCCTGTAGAGAGTACTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_m11.g1 MSMg01no463_m11.g1 CHROMAT_FILE:
MSMg01no463_m11.g1 PHD_FILE: MSMg01no463_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:19 2005
         (550 letters)



>mm_chr10_128482430_128483380
          Length = 951

 Score = 1027 bits (531), Expect = 0.0
 Identities = 546/551 (99%), Gaps = 1/551 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaactgaactcttaatgaatgagttcctactgtgtgccaagctctctctcactgacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aagaactgaactcttaatgaatgagttcctactgtgtgccaagctctctctcactgacta 692

                                                                       
Query: 61  ggtacccaattaagagattgactctagtgtgaaagttgaagacacatttcagcctattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ggtacccaattaagagattgactctagtgtgaaagttgaagacacatttcagcctattga 632

                                                                       
Query: 121 gtgttaatgttatgatctaaataagatttttaaactgaaaggcaattgaattactcagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gtgttaatgttatgatctaaataagatttttaaactgaaaggcaattgaattactcagtt 572

                                                                       
Query: 181 gtctgaactagaatcaacaaataccatcacaaggaacgacatttaaactgagtcctggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gtctgaactagaatcaacaaataccatcacaaggaacgacatttaaactgagtcctggaa 512

                                                                       
Query: 241 agtatg-ataattcaaaatagaaaagaggaatcaagatcaaaggaatattgcaaattggc 299
           |||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agtaggaataacacaaaatagaaaagaggaatcaagatcaaaggaatattgcaaattggc 452

                                                                       
Query: 300 atgtgaaatttcaatccaaggaactgaaaaagaaatctcattaatttcccacagaccaaa 359
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 451 atgtgaaatttcaatccaaggaactgaaaaagaaatcttattaatttcccacagaccaaa 392

                                                                       
Query: 360 ttcactaaggaaaaataagaggaactattttggtttcaaactaaattaattcctcactta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ttcactaaggaaaaataagaggaactattttggtttcaaactaaattaattcctcactta 332

                                                                       
Query: 420 aagtaaattacacatccatagtgttcgggcatctgaaattggatctgatctatgaatttt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aagtaaattacacatccatagtgttcgggcatctgaaattggatctgatctatgaatttt 272

                                                                       
Query: 480 tagcaattacaatcatatagaatctacactgtagataactgattatgtagaaatagagaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tagcaattacaatcatatagaatctacactgtagataactgattatgtagaaatagagaa 212

                      
Query: 540 gattgtatagg 550
           |||||||||||
Sbjct: 211 gattgtatagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space:   508140
Effective search space used:   508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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