BAC Information

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BAC

Clone NameMSMg01-464N19
Chromosome10 (Build37)
Map Location 15,921,667 - 15,922,137
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC637043, LOC100039492, LOC671439
Downstream geneLOC382457, LOC546472, LOC100039576, LOC627511
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464N19.T7 (MSMg01no464_n19.b1)MSMg01-464N19.TJ (MSMg01no464_n19.g1)
ACCAG549177AG549178
length729765
length of high quality
(start - end)
228 (90 - 317)472 (74 - 545)
definitionCHROMAT_FILE: MSMg01no464_n19.b1 PHD_FILE: MSMg01no464_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:45 2005CHROMAT_FILE: MSMg01no464_n19.g1 PHD_FILE: MSMg01no464_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATGAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGACC
GCGGAATTCTCTATTTGCAATATACCCTGNTGNTTTAAAATGGAATTATT
TGGTTTGATTTTGTCTGGTTTCTTACATTTATTTTTACATATTTTAGGTA
TCAGCCTTCTGTCAGATGTGGGAATGGTAAAACCATTTCCCATTCCATAG
GCTATAGTTTTGCCTTTTGGCCTTACATCAGCCTTTCAGTATTATAAGGT
CTTATTTATTAATTGTTGCTGATGTATCATTTATCTTACTGAAAATCAAT
CTACAGATCCAATGTATTCCCTANCTTAATTCCAGTTCAATTATTCACAG
ACTTAGAAAGTGTAATTCTCAAATTCATTTGGAGTAACAAAAAAAACAAC
CCCCCCAAAAAAAACCAAACAACAACAACAACAACAACAACAACAAACAG
GACAATGAAAACTACTCTTGACAATAAAATAACTTCTGGGGGAATCACCA
TGCCTGACTTCAAGCTGTACTACAGAACAATAATGATAAAAAATGCATGT
TATTGGTACAGTAACAGGCAGGAAGATAAAGGAATATAATTGAACACCAG
AAATGAACCCCCCCAGTTTATGGTCCCTTTGATTTTGACAAGGATCTTAT
TTTTTTCCAAGGGAAAAAAAAAAGAACGGATTTTTCAACAAATGGTGCTG
GGTACACCGGGTGGCCAACCGGTAGAAAN
GATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTTACAAAAATAAAATGAGGCAATT
AGCATATGGCTATTTATTCTCTTATATTAGCTCGCCACTTAGAAGTGACA
GGTATTCAGAAAGATAAAATGGAGTCATGAGGATTCAATTACAATGCACA
TTGGAAGGTAGTGTTTAAGTCAATCAATGCCAGTAATTTGTAGAGTGCTC
ATCACTGTACAGATATAAGAGGAAATGAGAGGGAGTCTTCGCTATTATAC
TTCCTTGCCTTTCGGTAATTTCTTTGCTCCATGTCTCACAAACATTGGAT
TCTGGTAGTGTAGAATTATTATTTTTTTTTTAGAAGAAAGAATGTTACTA
TTTGGTAACAAAGAACTGGCTGCAATAGAACAAAAGCTAAGAATTCTGCC
GGACAAGGTATTGTTCCTTATGGCACTGACTTGCCCAATAGGAAAATATA
GTAATTATTTCCATTTGACTGATTGGTCATGAAAAGGAAACTTACACAAC
TTTTTAGTCTAAAAATGAGACCATAGGGGACTAGGTATGAGAAGCTTTTG
AGTAACTTCATCTCAATTTTTATTTACCCAATAATTCACTTTTATTACTT
TTTATTATTTATTTAAATCCTGGTTATGGACCCCTCCTGGTTATCTATTT
CCACCATTATCCTCCTGGTCCTTCCCTTCCCTGAAAAGTTGTTGCAAGCC
TCCGTCTATCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_n19.g1 MSMg01no464_n19.g1 CHROMAT_FILE:
MSMg01no464_n19.g1 PHD_FILE: MSMg01no464_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:46 2005
         (472 letters)



>mm_chr10_15921467_15922337
          Length = 871

 Score =  859 bits (444), Expect = 0.0
 Identities = 465/472 (98%), Gaps = 1/472 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttacaaaaataaaatgaggcaattagcatatggctatttattctcttatattagctc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 671 actttacaaaaataaaatgaggcaattagcatatggccatttattctcttatattagctc 612

                                                                       
Query: 61  gccacttagaagtgacaggtattcagaaagataaaatggagtcatgaggattcaattaca 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 accacttagaagtgacaggtattcagaaagataaaatggagtcatgaggattcaattaca 552

                                                                       
Query: 121 atgcacattggaaggtagtgtttaagtcaatcaatgccagtaatttgtagagtgctcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atgcacattggaaggtagtgtttaagtcaatcaatgccagtaatttgtagagtgctcatc 492

                                                                       
Query: 181 actgtacagatataagaggaaatgagagggagtcttcgctattatacttccttgcctttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 actgtacagatataagaggaaatgagagggagtcttcgctattatacttccttgcctttc 432

                                                                       
Query: 241 ggtaatttctttgctccatgtctcacaaacattggattctggtagtgtagaattattatt 300
            ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 431 tgtaaagtctttgctccatgtctcacaaacattggattctggtagtgtagaattatta-t 373

                                                                       
Query: 301 ttttttttagaagaaagaatgttactatttggtaacaaagaactggctgcaatagaacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttttttttagaagaaagaatgttactatttggtaacaaagaactggctgcaatagaacaa 313

                                                                       
Query: 361 aagctaagaattctgccggacaaggtattgttccttatggcactgacttgcccaatagga 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aagctaagaattctgcctgacaaggtattgttccttatggcactgacttgcccaatagga 253

                                                               
Query: 421 aaatatagtaattatttccatttgactgattggtcatgaaaaggaaacttac 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaatatagtaattatttccatttgactgattggtcatgaaaaggaaacttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 871
Length adjustment: 10
Effective length of query: 462
Effective length of database: 861
Effective search space:   397782
Effective search space used:   397782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)