BAC Information

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BAC

Clone NameMSMg01-465B04
Chromosome10 (Build37)
Map Location 62,042,915 - 62,043,327
singlet/doubletsinglet
Overlap geneDdx21
Upstream geneLrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik
Downstream geneDdx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465B04.T7 (MSMg01no465_b04.b1)MSMg01-465B04.TJ (MSMg01no465_b04.g1)
ACCAG549339AG549340
length748736
length of high quality
(start - end)
375 (42 - 416)416 (72 - 487)
definitionCHROMAT_FILE: MSMg01no465_b04.b1 PHD_FILE: MSMg01no465_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:02 2005CHROMAT_FILE: MSMg01no465_b04.g1 PHD_FILE: MSMg01no465_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:02 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGGATATCCAGGGCTACAACACAGAGAAACCCTGTCTTGAGAAAGCAA
AACAAAACCAACAACAACAAAATGAGAGACGTGTAACTTGTTCCCTGTGC
CTGAGTTATTTCACTGAGTTTAATATTCCCACACATTCCCACAAATGACA
GAATGGCTTCCTTTTGATGGCTGAGTANGTAATTCTCACTGTACAGAGGT
GCCCTTTCTTAATCTGCTCGTCAGCTGGGAGACATTTGGGTTGATTCCAT
CTTTTGCAAAGAAAATTTTTTTAATGTTGCCTTGGGTGAATAAATTAGGG
ACAGAAATACNNCTTCCCTTTCTTTACATATTTTATCTCAGTCACCAGAA
GCACAAATGCTGAAGAGACAGAACTTCTTGNNNNNNNNNNNTNTNNTTCT
TTTTTTCCTTCTTTTCTTTCCCTCCTTCCTTCCCTTCCTTCCCTCCCTTT
TTTTTCTCCCTCTCCCCCATCTACCCTTTTATTTTACCCCCGCTTATTTT
CTCTTCTCCGTTACATTTTCTTTTCCCCCCCTATTCTTTTTTTCCCTCCC
CCCCTCCCCTCCCTTTTTCTTTCCCCTCCCAATTTTTCTTCTTTTTCTTT
CCCTCATTTCCCCCACTTCCCTCCTTTTTTGTTTTTTCTTCCTTCTTTCC
CCACATTCCATCTCCTCTTTTTTGCCTGCTCCCTTTTACCTCTCTCCC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAATTGGCACAATTTAAGTGAAACATGAC
TTTTCAAACAAATGAAGTTTCTTTTGGATTGCAGAAACTAAGCAATATTT
ATATGTATAATTCAACTATTATTTGGTTTAAATGGGCTTGTTGGGAAATG
TTATCATTTTTACTATTTTCTACAGAGAAAATATTTTCCACTTTATCAAA
TAAATCTGGACTTTGAAATTACAGCCTGTTTTTATGTTCCAGCTGTCTAT
GTATTTGTTTTCCTGAAACTGTACATAAAATGTTTTTACATTAAAATGAA
TTGCTGTATAAAGTACTGCATTATGCCATAATAAAGATACCGATGCTTTA
TATTTAGTTCTTGGTGGCTTTTATTTTATAGCAGTGACTGCTAGGTCTGT
AAATCTAGTAGCTTGCTTGCCCTTTGCGTATACTGTATTACAGCAGATCA
GGTTATAACGGGCAGTTAGCCTTGCTTAAATTGTCATTACCATGACCCCT
TTTCTATGTTTACCTACCTTCCCTGTCTTTTGAGACCACAGAATAGGCTT
TCTTACTCCCCCTTATCTAAGGTTTCGACCCCTCTTCTCGTTTTTTTGCG
TTTCCCACCTTCTCCTTTACCAATTCCCCTCTGGTTTTCCCCTTTTCCCA
TATTACCCGTTTTTCTCACCCCCCATCCTACCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_b04.g1 MSMg01no465_b04.g1 CHROMAT_FILE:
MSMg01no465_b04.g1 PHD_FILE: MSMg01no465_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:02 2005
         (416 letters)



>mm_chr10_62042715_62043529
          Length = 815

 Score =  752 bits (389), Expect = 0.0
 Identities = 408/415 (98%), Gaps = 3/415 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caattggcacaatttaagtgaaacatgacttttcaaacaaatgaagtttcttttggattg 60
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 caattgacacaatttaaatgaaacatgacttttcaaacaaatgaagtttcttttggattg 554

                                                                       
Query: 61  cagaaactaagcaatatttatatgtataattcaactattatttggtttaaatgggcttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cagaaactaagcaatatttatatgtataattcaactattatttggtttaaatgggcttgt 494

                                                                       
Query: 121 tgggaaatgttatcatttttactattttctacagagaaaatattttccactttatcaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgggaaatgttatcatttttactattttctacagagaaaatattttccactttatcaaat 434

                                                                       
Query: 181 aaatctggactttgaaattacagcctgtttttatgttccagctgtctatgtatttgtttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 433 aaatctggactttgaaattacagcctgtttttatgttccagctgtctatgtat--gtttt 376

                                                                       
Query: 241 cctgaaactgtacataaaatgtttttacattaaaatgaattgctgtataaagtactgcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cctgaaactgtacataaaatgtttttacattaaaatgaattgctgtataaagtactgcat 316

                                                                       
Query: 301 tatgccataataaagataccgatgctttatatttagttcttggtggcttttattttatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tatgccataataaagataccgatgctttatatttagttcttggtggcttttattttatag 256

                                                                  
Query: 361 cagtgactgctaggtctgtaaatctagtagcttg-cttgccctttgcgtatactg 414
           |||||||||||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct: 255 cagtgactgctaggtctgtaaatctagtagcttggcttgccttttgtgtatactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 815
Length adjustment: 9
Effective length of query: 407
Effective length of database: 806
Effective search space:   328042
Effective search space used:   328042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)