BAC Information

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BAC

Clone NameMSMg01-465M24
Chromosome10 (Build37)
Map Location 116,058,459 - 116,245,119
singlet/doubletdoublet
Overlap geneLOC668080, EG668091, Gm239
Upstream geneEG668073, Tspan8, Ptprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2
Downstream geneRab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465M24.T7 (MSMg01no465_m24.b1)MSMg01-465M24.TJ (MSMg01no465_m24.g1)
ACCAG549905AG549906
length770754
length of high quality
(start - end)		307 (71 - 377)358 (72 - 429)
definitionCHROMAT_FILE: MSMg01no465_m24.b1 PHD_FILE: MSMg01no465_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:03 2005CHROMAT_FILE: MSMg01no465_m24.g1 PHD_FILE: MSMg01no465_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(116,244,827 - 116,245,119)(116,058,459 - 116,058,816)
sequence
ATTXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAAT
TCCTTGGTAGCAAGATTAGACCCTAGGATATCTAGGAATTCTGGTTGGTT
GATGTTATTCTTCCTATGGGGTTGCAAACCCCTTCAGCTACTTCAGTCCA
TTCTCTAACTCCTCCATTGAGGAGGACCCTGTGCTCAGTTCAGGGGTTGG
CTACAAGTCCGCCTACAGAGAGCATCTAAGATTCCAGTTCCAACCTGCTA
CAAATGCTTGTCTTTCTTCAACTCAATTACTTAAACTGAGTTTCAGAGTT
ATGTCATTTTATTATATATACTTTATATCTATATATGTCTGTCTATCTGT
GTGTGTGTGTGTGCGTAAGTCATATGTCAGTCTTGGTTATCATCCCTTAC
AGATAGACGCCCCCCACCCCGCTTCTTTGAAACCGGGCCTCCTCCCTGTA
TTGTTGCTTGTTCGCTTCCGATCTTCCTCCATAACCCCCTACTTTTTTTT
TCCTCCTCTTCTTTTCTCTATTCTTTTATGTTTTACTCCCTCCCCCCTTT
TTTTTTTTTTCTTTTCTTCCTTTATTTTTTTTCTTCTTTTTTTTACTACC
TCCCTTTGTCCCACACTCTATTCTCTTTTCTACCTCTCTCTTCTCTTCTC
TTTCTTTGCCTCTTCACTTCAACTGCAACATTTTATATTCTCGTATCCTT
TTCCCTTTGTCTCTTTTTCTTTTTCCCCGCCCCACCTATCTCTTCATTTT
TTTTTTTTTTTTCCTCCCCG

AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTATTCAATTCTCCAGTTACTGTGACCTG
AACAATGACTTCACTGAATCTGCTTACTGCTGTAAAATACGGAAAACAAT
ATTATCTATTTTGTGCAATCAGACATATGTGTGTGTGAAATACAACTTAT
AAACTTGCTTAGAATATAGTAACTGTACAAATCAAGAAATGTGGTACACT
GGATGTCCATCTCAGCGGATGCAGAACAAACATTTGACAAAATCCATTAA
TCCTTTCTGATAAGCACTCTTGGCATAACTAGGTATGAGACTGCCGCTCA
GCAGAACCAGGATGGCATATCCCAAGCCCACAGCTAACAGTGCACTCCAT
GGAGGGAGCATGGCAGTTTCTCCTCAGGAATAGAAGAAACATGTCCGTGT
TTGTAACTTGTAACCACATAGTGCTGAAAATAACCCGAGCAGTCCAGCTA
GAAAAATACATACAACCCAGCATTGTAAAGGATGAAGTAAAAAGCTGTAT
AACCCCTGGGCCCTATCTATGGAAAGCCCTGAAAAATTTTGCTTTAAAAC
ATTTTCTAATCCTTGGTAAATAAAGCCCCCCCCCCTCCTTCTTAAATGAC
AATTTATCCCGTTTTCCCCTTCTCGTGAATTATCTCTCAATCATACCTTT
TCTTACTTTGCTCCCGTCTTTTTCCCCCCTTTTTATATTATAAACTCACT
CACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_m24.b1 MSMg01no465_m24.b1 CHROMAT_FILE:
MSMg01no465_m24.b1 PHD_FILE: MSMg01no465_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:03 2005
         (307 letters)



>mm_chr10_116244483_116245189
          Length = 707

 Score =  543 bits (281), Expect = e-159
 Identities = 290/293 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctaggatatctaggaattctggttggttgatgttattcttcctatggggttgcaaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ccctaggatatctaggaattctggttggttgatgttattcttcctatggggttgcaaacc 578

                                                                       
Query: 61  ccttcagctacttcagtccattctctaactcctccattgaggaggaccctgtgctcagtt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ccttcagctacttcggtccattctctaactcctccattgaggaggaccctgtgctcagtt 518

                                                                       
Query: 121 caggggttggctacaagtccgcctacagagagcatctaagattccagttccaacctgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 caggggttggctacaagtccgcctacagagagcatctaagattccagttccaacctgcta 458

                                                                       
Query: 181 caaatgcttgtctttcttcaactcaattacttaaactgagtttcagagttatgtcatttt 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 caaatgcttatctttcttcaactcaattacttaaactgagtttcagagttatgtcatttt 398

                                                                
Query: 241 attatatatactttatatctatatatgtctgtctatctgtgtgtgtgtgtgtg 293
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 attatagatactttatatctatatatgtctgtctatctgtgtgtgtgtgtgtg 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no465_m24.g1 MSMg01no465_m24.g1 CHROMAT_FILE:
MSMg01no465_m24.g1 PHD_FILE: MSMg01no465_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:03 2005
         (358 letters)



>mm_chr10_116058259_116059016
          Length = 758

 Score =  685 bits (354), Expect = 0.0
 Identities = 357/358 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattcaattctccagttactgtgacctgaacaatgacttcactgaatctgcttactgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattcaattctccagttactgtgacctgaacaatgacttcactgaatctgcttactgct 260

                                                                       
Query: 61  gtaaaatacggaaaacaatattatctattttgtgcaatcagacatatgtgtgtgtgaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaaatacggaaaacaatattatctattttgtgcaatcagacatatgtgtgtgtgaaat 320

                                                                       
Query: 121 acaacttataaacttgcttagaatatagtaactgtacaaatcaagaaatgtggtacactg 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 acaacttataaacttgcttagaatatagtaactgtacaaaccaagaaatgtggtacactg 380

                                                                       
Query: 181 gatgtccatctcagcggatgcagaacaaacatttgacaaaatccattaatcctttctgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgtccatctcagcggatgcagaacaaacatttgacaaaatccattaatcctttctgat 440

                                                                       
Query: 241 aagcactcttggcataactaggtatgagactgccgctcagcagaaccaggatggcatatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcactcttggcataactaggtatgagactgccgctcagcagaaccaggatggcatatc 500

                                                                     
Query: 301 ccaagcccacagctaacagtgcactccatggagggagcatggcagtttctcctcagga 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaagcccacagctaacagtgcactccatggagggagcatggcagtttctcctcagga 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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