BAC Information

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BAC

Clone NameMSMg01-467B22
Chromosome10 (Build37)
Map Location 20,129,543 - 20,130,004
singlet/doubletsinglet
Overlap genePde7b
Upstream geneIfngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344
Downstream geneLOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467B22.T7 (MSMg01no467_b22.b1)MSMg01-467B22.TJ (MSMg01no467_b22.g1)
ACCAG550906AG550907
length820760
length of high quality
(start - end)
144 (60 - 203)462 (67 - 528)
definitionCHROMAT_FILE: MSMg01no467_b22.b1 PHD_FILE: MSMg01no467_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:53 2005CHROMAT_FILE: MSMg01no467_b22.g1 PHD_FILE: MSMg01no467_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTC
AGTGTTGCCAAGAGGCTGAGGACACACATCAGAAGTCGCCCCAGTCACCA
CTCACTACCAACATGGATGTCAGAAACAGCTTGGTTTGTAGTGTTTTTGG
TGACTGGGTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTN
ATTNNGNNGGGGGTTGNTGGTTTGGTTTGGCGTCGGGGGTTTTTGTTTTG
GCTGTCCGTTTGTCGGTCCGCGGCGTGGTTTTTTTGCTGTTTCGGCGTTT
GTGCTCCGCTCTTTTTTTTTTCCCTGCTGCGTTTTTTGCGTCTTTTCTCT
TTTTTTTTTTTTCTCCTTGCTTTTGTTTGCTTGGCTTTGTCTCCCGGTCT
CTCTGTTTGTTTTTTTTCTTCCCCCCCCCCCGTTCTTCTTTTTTGCGCTT
CCGCCCCCGCCTCTTTTTTACCCCGTTTCTTTTTCCCTTCTCTTTTTTTT
CCCCCCTCTTCTTTTTTTTTTTTTCCACTCTTTCCTTCTCTCTTCTCTAC
TACTTTTTTCGTTTTTTTTTTTGTCCTCCCCCGTCTGTTTCTTACTTTCT
TTTTCCATCTCTTCTTTCTCTTTTATTTATTTTTCCCTTCAATCCTTTTT
TTCTCTTCCTTCTTTCTGTTCCCCCCTCCTTCTTTTTTCCCCTCTTCCTT
TTTTTTTCCTTTCACTTTTATCCCCTTTTTACCCCTTTACTTCTCCATCC
CCTTCCTAATATCTTTCTTATGTTCTTTCTCTTTTCCCCCCATCTTACTT
CTTTTTGCCCTACACTCTTA
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAATGGTCTAACTCTTGTAAACTCTTGTTAGTTC
TTGGCTAACTTCGACCTGTATCATTGGAAGTTTTAAGAACCAGAGAAAAA
GGCATACAAAAGGCTCTGAATTATTCTCTCAGAATGGAAGACATTGACTT
AAAAACAATGCTTAGCATTCAGGCTGTGCTCAGCTCATTCAAATGAAGGT
CAGGGCAAAAATCAAACTTGTCTGCCATACTGTTACAGTCACAGGGGACA
CACACACACACACACACACACACACACACACACACACACACACAGCTGTT
TGTATGTGTCTCTGCAAATATGTGAACATATATACATATACACACATATA
TGGCTGTCTGTCTGTATGTGTATGTGCATCTTGCTTTGATTCATTGTGTT
GTGTTGTTATTACCTGTTTCCATAATAAGTCTGTGATATTCATTATATTT
ATTTAAATCTTTCTTCCCCATGAAAGGGTTGGATGAGTCCCAAGAAACTT
AATGGAGAAATGTTTGATAATTATTAGCAGGTAATAGATTGGTGGTTTCC
GCTCCTGGCTTTCTTGGGAAATATGTCCCACAACATGCCGTCGCTAGACT
TCCTCTTTTCTTTTTTTTCTCCACCCTCATTTTTTCACGCCCTTATCCCT
ACCCCCTCATTTGTTGTTACATACCCAAACCGACACCCGTTTCCTCTTCC
AATTCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_b22.g1 MSMg01no467_b22.g1 CHROMAT_FILE:
MSMg01no467_b22.g1 PHD_FILE: MSMg01no467_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:53 2005
         (462 letters)



>mm_chr10_20129343_20130204
          Length = 862

 Score =  835 bits (432), Expect = 0.0
 Identities = 455/464 (98%), Gaps = 4/464 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatggtctaactcttgtaaactcttgttagttcttggctaacttcgacctgtatcattg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 aaatggtctaactcttgtaaactcttgttagttcttggctaactttgacctgtatcattg 260

                                                                       
Query: 61  gaagttttaagaaccagagaaaaaggcatacaaaaggctctgaattattctctcagaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagttttaagaaccagagaaaaaggcatacaaaaggctctgaattattctctcagaatg 320

                                                                       
Query: 121 gaagacattgacttaaaaacaatgcttagcattcaggctgtgctcagctcattcaaatga 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 gaagacattgacttaaaaacaatgcttagccttcaggctgtgctcagctcattcaaatga 380

                                                                       
Query: 181 aggtcagggcaaaaatcaaacttgtctgccatactgttacagtcacaggggacacacaca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 381 aggtcagggcaaaaatcaaacttgtctgccatactgttacagtcacagg--acacacaca 438

                                                                       
Query: 241 cacacacacacacacacacacacacacacacacacacagctgtttgtatgtgtctctgca 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 439 cacacacacacacacacacacacacacacacacacacggctgtttgtatgtgtctctgca 498

                                                                       
Query: 301 aatatgtgaacatatatacatatacacacatatatggctgtctgt--ctgtatgtgtatg 358
           |||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 499 aatatgtgaatatatatacatatacacacatatatggctgtctgtgtctgtatgtgtatg 558

                                                                       
Query: 359 tgcatcttgctttgattcattgtgttgtgttgttattacctgtttccataataagtctgt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgcatcttgctttgattcattgtgttgtgttgttattacctgtttccataataagtctgt 618

                                                       
Query: 419 gatattcattatatttatttaaatctttcttccccatgaaaggg 462
           |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 619 gatatttattatatttatttaaatctttcttccccatgaaaggg 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)