BAC Information

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BAC

Clone NameMSMg01-467F04
Chromosome10 (Build37)
Map Location 101,523,565 - 101,523,928
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413, Cart1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467F04.T7 (MSMg01no467_f04.b1)MSMg01-467F04.TJ (MSMg01no467_f04.g1)
ACCAG551060AG551061
length724749
length of high quality
(start - end)
364 (73 - 436)338 (77 - 414)
definitionCHROMAT_FILE: MSMg01no467_f04.b1 PHD_FILE: MSMg01no467_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:09 2005CHROMAT_FILE: MSMg01no467_f04.g1 PHD_FILE: MSMg01no467_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAGGTGTTCTTGCTCAATAGAGTGCTTCAATGACCCAACA
TGAAGTCTTGGCTTTGAAGAAAACTTTAGAAGTTTAGAAGCAATCCCTTA
TAAAGAGAACAATTTTCACTGTGGATTTAGGAATAAGCTGAATTCAGCAA
CCAGTTGCGCAAGGTGCTAGTTAAACCTTATTTTGTTGTTATTTCTCTAG
AGCCTCACAATGTATCTCCGACAGGTCTAATACTAGAGCTGTAGTGCAGG
CTAACCATGAACTCATAATCTTCCTGTCTCAATCTCCCAAGAGTTACACC
CAACAGGTTTGGATCACCACTTAAAGCTGAAACAGTCTGTAATTGAAAAC
TTGTAAAAAGGAGCTAACACGCCATATTAGTAATTAAAGAAGGTAAGAGT
ATGCTACCTTCTTTCTACTCTTTTTTGCTTGTTTGCCTTCTTATGGAATT
TACAGTAAAGCGTTATTAATAATCTGAAATCTCATCTTCCAAATTATCCT
GCTATTATGATTGGTATGCTCTCTATTCTCTTGATTCCCTTTTTTTTCCC
ATGTCCTATCAGCTCCTCTCACTTTATTCAGTTGGCCACGACTCAATAGT
ACCTCTACTTTAAGGGTATTTCTTCTTTTCTCTTTTTCCCCCGTATTTCC
GTCTGGTTGTCTCCCTCTCGTTGN
CCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTGGAATCTCTATGCCTATTGC
TCATTTTTCATAGTGCTGGAAGGTGCTATCTATATGCACTCCCAGAGAAG
GAAGTAATCAGAGGAAATCCTGTAAGCTACAGTGATGACGAGCTTACTGT
GATGGGACAGCTGGTGAAAGAGTGGCAAAAACTTTATGAAGATAAACAAC
ACTTTCCTGATTGGACTTAACTTGTGGTTGATAAGATGAAAGCCATACTT
GGTAGGATTTTTTTTAATGTACTACGAGCTTATAGCTAGAGAGGTTATAG
TCCATTTAGGAGAATTTACTGATTTGCAAAATGAGCAATATTACATGAAT
TCCCCATGCTCAGAGAATAAGAATGTGCAAAATTCTTTGCCTTAAAATGT
GAGTCTATACTTCACCACATCTTCTAAGTTTCTGAAATCATTTGCGGATA
AGGTGACCAAATTCTCCTAGACCTATACAGTTATTATTGACCCACTACAG
AGCGCCTTTTTCTATTCTTCATGGTTGTCTTCCGTTTTATTCTTTATTAC
TTCCCTCACGCACCGTTCACCTCTCTTTAATGTCCGCTTTCCTCACCCTT
TTGTCTTTTTCTCCCCCATTGGCCTCACCCCTCCTTATTTTCTTTTTTGG
TCCCTCGACGTCCCTAGTCCCGGAGGTGGGGGTTGCCCGTTCCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_f04.b1 MSMg01no467_f04.b1 CHROMAT_FILE:
MSMg01no467_f04.b1 PHD_FILE: MSMg01no467_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:09 2005
         (364 letters)



>mm_chr10_101523532_101524295
          Length = 764

 Score =  681 bits (352), Expect = 0.0
 Identities = 361/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcaatagagtgcttcaatgacccaacatgaagtcttggctttgaagaaaactttagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctcaatagagtgcttcaatgacccaacatgaagtcttggctttgaagaaaactttagaag 338

                                                                       
Query: 61  tttagaagcaatcccttataaagagaacaattttcactgtggatttaggaataagctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tttagaagcaatcccttataaagagaacaattttcactgtggatttaggaataagctgaa 278

                                                                       
Query: 121 ttcagcaaccagttgcgcaaggtgctagttaaaccttattttgttgttatttctctagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttcagcaaccagttgcgcaaggtgctagttaaaccttattttgttgttatttctctagag 218

                                                                       
Query: 181 cctcacaatgtatctccgacaggtctaatactagagctgtagtgcaggctaaccatgaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 cctcacaatgtatctccgacaggtctaatactagagctgtagtgcaggctaaccatgaac 158

                                                                       
Query: 241 tcataatcttcctgtctcaatctcccaagagttacacccaacaggtttggatcaccactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 157 tcataatcttcctgtctcaatctcccaagagttacacccaacaggtttggaccaccactt 98

                                                                       
Query: 301 aaagctgaaacagtctgtaattgaaaacttgtaaaaaggagctaacacgccatattagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 97  aaagctgaaacagtctgtaattgaaaacttgtaaaaaggagctaacacgtcacattagta 38

               
Query: 361 atta 364
           ||||
Sbjct: 37  atta 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)