BAC Information

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BAC

Clone NameMSMg01-468G19
Chromosome10 (Build37)
Map Location 33,758,724 - 33,759,127
singlet/doubletsinglet
Overlap gene4732454E20Rik
Upstream geneTrdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1
Downstream geneBB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468G19.T7 (MSMg01no468_g19.b1)MSMg01-468G19.TJ (MSMg01no468_g19.g1)
ACCAG551899AG551900
length1,103778
length of high quality
(start - end)
---405 (82 - 486)
definitionCHROMAT_FILE: MSMg01no468_g19.b1 PHD_FILE: MSMg01no468_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:38 2005CHROMAT_FILE: MSMg01no468_g19.g1 PHD_FILE: MSMg01no468_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNGGGGGGGGNAATTTTGGTTNCTTACATTGNTCCGANNNNNNNNNNN
NNNNNNNNNNNTTTTGGTNAGAGGNAGNGAGGNGGGGGNNNNNNNGGCGG
GGGGGGANNTTTACCANNANNTATAAAAAGAAANNNNNNGGGGNNNNNNN
NNNNNNNNNNNNNNNNNNGNNNNGNNNNNTTTTTTTTTCTCCCCTAGGAG
AGGAGGAGGAGNNGGGGGGNNNNNGNGAGGGGGAANGGGNAGGAANANTG
TNGTGGGGAGGGTGGGTGTGNANTATGTNNTTGTTTNTATTTGAGAGGGG
GTGTTTNNANNNNTTTAGGGGGAGGTGGGGGGGGTGGGGGGGGGTGTGGG
GGGTGGTGGGGGGGGGAGGGAGTTGTGTTTTTGTGGATGGGTTTTTGTGG
ATGGGGTGTGGTGTTGTGGTGGTNNTTTTTNAAATTTTTGTGGTGNGGGG
NNGGGGGTGTTTTTTTGTTTTTTTGGGGNTGAGAGGANGNGGGGGGNGNG
GGGGGGNGGGTGTTGTTTTTTTCCCCCCCCCCTCCGGGGGGGGGGGGGGG
GGGTGGTGGGTGGNTNGTGGNTGNNTTNTGTGGGGGGGGGNNGGNNTGTG
GATTATGAAGNTAANTGGGTTNNNTGGGGGGTGGNTGGTGTGGTGNGTGT
GGTGGNTGGTGTGGTTGGTGGGGGGTGTGGGNTGGGTGGCGGGAGGTGGT
GGNGTGGTGGTGTTTGGTGTGGGTGGGGGGTGGTGTGGGGGTGTNTCTGG
TNGGTTTGTGGGGTTGTGGTGNTGGGNGTGNTGTGGTGGCGGGGGGGTGG
GGAGGGTGAGGTGGTGGTGGGGNGGGGGGGGTTTGGTNTGGTGGGGTGGT
GGGGTTGGGNNGTGTTGNNGGTGCGGTGTGTGGGATGTGTTGGTGAGGAG
ATGNGTGGGGTGTTGTTGTGTGTTTGCGACGCGNGTTTGTTTGAGGGGTT
GTGGTGGGGGGGTGGGTTGTGTGGGTTGGGNNTGGTGGGGCGCGATGGGG
GTGTGTGTTGGTTGGTTATGTTTGATTGGTGGTNTTGTATGGNTGGGGGT
GGTGGGTGGTTGGGTTGNGGCGTGTGGTGTGGGNGTGGGTNGGTTGTTGG
GTG
NNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCATCTCCTTTACCAAAA
AGTCATGGCCACGATTAACTGGCTCAGAAGGTAAGCTTTCTATGTTTGAG
TTTGATGAGGAGAGGGCTTCAGAAGCCATCAGAGGCTGTTTCCTATTGTT
AAGTCCTAAGCAACTATTAATCTTCCTGGTGATGTAACACTATAACTTCA
TACATTCTTTGATTGTGCAGTTAATTGAAAACCTTATTGAAAAGTCTCTT
TGTGGTGAAGGTCCTGAAAACTAATAAACCTTTTCTGAGTTTGGTGAGGG
ATGATTCATTTACTAGTAAGTCAACACAGACGAAATTATAAAACTCTTGG
CTCAGTAGAGACAAAGAACTCTCACCCTCATGGGAATTTTGAGAATAAAA
TGAATGAGACATTCCCTGTTCACTGACTTTCCTATTGGAGGGAACTGAGT
GGCCTTCTACTATGTATATCTACTTTAACTACTTTTTCCCCATTGGTTTT
TGGAAATATGGTCTAGCCCCAGTACCTTGTTAATAATGTGGAAGTTTACC
TCTTCCAGTCTCCTTGAATAAAGCTCACCTCTTATGGGTTTCTTTAGTGT
TTTGGGCATGCTGTAGTCTTTTTATTGTTTCTTTTTAACTTCGCTCGTAG
TAGTCTGATCCCGCTTTTCTTTTTTTGTTTTATTGTCTTTATCGTTTTCT
TTACTGATGTGCTCTTAACCACCTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_g19.g1 MSMg01no468_g19.g1 CHROMAT_FILE:
MSMg01no468_g19.g1 PHD_FILE: MSMg01no468_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:38 2005
         (405 letters)



>mm_chr10_33758524_33759327
          Length = 804

 Score =  698 bits (361), Expect = 0.0
 Identities = 394/405 (97%), Gaps = 1/405 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccatctcctttaccaaaaagtcatggccacgattaactggctcagaaggtaagctttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccatctcctttaccaaaaagtcatggccacgattaactggctcagaaggtaagctttct 260

                                                                       
Query: 61  atgtttgagtttgatgaggagagggcttcagaagccatcagaggctgtttcctattgtta 120
            |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ctgtttgagtttgttgaggagagggcttcagaagccgtcagaggctgtttcctattgtta 320

                                                                       
Query: 121 agtcctaagcaactattaatcttcctggtgatgtaacactataacttcatacattctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcctaagcaactattaatcttcctggtgatgtaacactataacttcatacattctttg 380

                                                                       
Query: 181 attgtgcagttaattgaaaaccttattgaaaagtctctttgtggtgaaggtcctgaaaac 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgtgctgttaattgaaaaccttattgaaaagtctctttgtggtgaaggtcctgaaaac 440

                                                                       
Query: 241 taataaaccttttctgagtttggtgagggatgattcatttactagtaagtcaacacagac 300
           |||||||||  ||| ||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 441 taataaaccaattccgagtttggtgagg-atgattcatttactagtaagtcagcacagac 499

                                                                       
Query: 301 gaaattataaaactcttggctcagtagagacaaagaactctcaccctcatgggaattttg 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 500 gaaattataaaactcttggctcagtagagacaaagaactctcagcctcatgggaattttg 559

                                                        
Query: 361 agaataaaatgaatgagacattccctgttcactgactttcctatt 405
           ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 560 agaataaaatggatgagacattccctgttcactgactttcctatt 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 804
Length adjustment: 9
Effective length of query: 396
Effective length of database: 795
Effective search space:   314820
Effective search space used:   314820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)