BAC Information

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BAC

Clone NameMSMg01-469E10
Chromosome10 (Build37)
Map Location 23,619,347 - 23,619,768
singlet/doubletsinglet
Overlap geneVnn1
Upstream geneEya4, Rps12, 1110021L09Rik, Vnn3
Downstream geneTaar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537, Ctgf, Enpp1, Enpp3, Crsp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469E10.T7 (MSMg01no469_e10.b1)MSMg01-469E10.TJ (MSMg01no469_e10.g1)
ACCAG552550AG552551
length760798
length of high quality
(start - end)
274 (46 - 319)416 (79 - 494)
definitionCHROMAT_FILE: MSMg01no469_e10.b1 PHD_FILE: MSMg01no469_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:48 2005CHROMAT_FILE: MSMg01no469_e10.g1 PHD_FILE: MSMg01no469_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATTATAATTTGCGTGCGGTAAACGAATCACATTCAAAATAGGATCCGC
GGAATTCTATCTTACCTGCAAAGAAGACCTAATTCCAATACTCTTCAAAC
TATCCCACAAAATAGAAACAGAAGGAACACTATCCAATTCATTCTATGAA
GCCCCAGTTACATGGGGTATTTTCCCTTGGACATGGAACAGTTCCTGTCT
AATCAGGAACTTGTCACATTTTCCTTTCATAGAGGACTTCATAAGAAAAA
ATTTTCTACTTCTATCATGTTTAATGTTCCAAATAGATTTTTAAAACTGC
TTGAGTGCTTTTAGCTTCTTTTTTATATCATGTATGTTTAAGAGGCATTT
AACTGTTATAAATTATTTTGATGACTTAAAATAAATGTCAATACTGAGCT
GTATATTTAAAAAAAAAAAGAAAGTAAAAAAGAGAAAAACCATACCAGAA
GAGGGCAAGCAGCACAACATTGATCCTGATGTCCCCTCTCTTGTTCATTC
CTTACCGTTAGGTAGACTATTTGGACATTACACACTCAAAATAACACATA
TACGGACCTTCAACATACTTCACCCCTTTATACGTACATATAAAAGCTCT
TCTTCATATAATCACCCCTTACGTAACCCACAAAAACAGAAGATCACCCG
TGCTACTGTCTCCCCTTTCCAGTCTATGCCTCGGAAGGCATCCATTCCTT
CTCTCCCAAAAATCCATAACCTATGAGCTTATATTCTGCGCTTGGACATC
ACTCTTGTAT
NCCAATGATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTGGACACCATACTGTTCC
CAACCGCCTGGATGGACGTCCTTCCTCATTTGGCAGCCATTGAATTCCAC
TCAGCTTGGGCTATGGGCATGGGGGTCAATTTCCTAGCAGCTAATCTACA
TAATCCCTCGAGGAGAATGACAGGTAGGTAATATGTGCTCTTTAAACTTT
AGTTAGAGAGGGCATCTAAAATATTAGTATGTACATCTTTTATTTTCTAA
CTCGTAAATTTTAAAGCTAAGGTATTCTTTTAATAGAAACTATTTGTTAA
TATATATATAACTATATATGTACACATATATAGTTATATATAGTATGTAA
TAAGAACATATATATATATACTAATTCAATATATATATATATATGGATGC
ATATATATATATATATATATATATATATATATATATACTCTGTGTGTGTG
TGCGTGTTCATTCTTTTTTTCCCCTTTTTTCTCCTCCCCTTCTTTTTTCC
TCTTTTTCTTTTCCCCTTCTTCTCCTCTTTCTTTTTCTCCCTTCTTTTAT
ATACACCCCCTCTCCTTCTCCCCCATTTCCCCTCTCCCCCTTTTTCCTCC
CCCCCTCCCCTTTTTTTCTCTCTCGTCCCTACCCCTCTCCCTTTTCCCCT
TCCTCCTCTTTTTTTCCCTTTATCTTTTCTTTTTCCCTCCCCCCCCTTTT
TTCCCCTCTCTCTTATCCCCCCTATTTTCTTTTTCTCCCTTTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_e10.g1 MSMg01no469_e10.g1 CHROMAT_FILE:
MSMg01no469_e10.g1 PHD_FILE: MSMg01no469_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:48 2005
         (416 letters)



>mm_chr10_23619147_23619962
          Length = 816

 Score =  746 bits (386), Expect = 0.0
 Identities = 411/422 (97%), Gaps = 6/422 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtggacaccatactgttcccaaccgcctggatggacgtccttcctcatttggcagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtggacaccatactgttcccaaccgcctggatggacgtccttcctcatttggcagcc 260

                                                                       
Query: 61  attgaattccactcagcttgggctatgggcatgggggtcaatttcctagcagctaatcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgaattccactcagcttgggctatgggcatgggggtcaatttcctagcagctaatcta 320

                                                                       
Query: 121 cataatccctcgaggagaatgacaggtaggtaatatgtgctctttaaactttagttagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataatccctcgaggagaatgacaggtaggtaatatgtgctctttaaactttagttagag 380

                                                                       
Query: 181 agggcatctaaaatattagtatgtacatcttttattttctaactcgtaaattttaaagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggcatctaaaatattagtatgtacatcttttattttctaactcgtaaattttaaagct 440

                                                                       
Query: 241 aaggtattcttttaatagaaactatttgttaatatatatataactatatatgtacacata 300
           || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgtagtcttttaatagaaactatttgttaatatatatataactatatatgtacacata 500

                                                                       
Query: 301 tatagttatatatagtatgtaataagaacatatatatatatactaattcaatatatatat 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 501 tatagttatatatagtatgtaataaaaacatatatatatatactaattcaatatacatat 560

                                                                       
Query: 361 atatatggatgcatatatata--tata----tatatatatatatatatatatatactctg 414
           ||||||||||| |||||||||  ||||    |||||||||||||||||||||||||||||
Sbjct: 561 atatatggatgtatatatatacatatacatatatatatatatatatatatatatactctg 620

             
Query: 415 tg 416
           ||
Sbjct: 621 tg 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)