BAC Information

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BAC

Clone NameMSMg01-470C11
Chromosome10 (Build37)
Map Location 71,190,850 - 71,191,277
singlet/doubletsinglet
Overlap genenone
Upstream geneBicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860, LOC216081, EG216082, LOC622812
Downstream geneEG327767, 1700049L16Rik, LOC100040505, Zwint
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470C11.T7 (MSMg01no470_c11.b1)MSMg01-470C11.TJ (MSMg01no470_c11.g1)
ACCAG553222AG553223
length724993
length of high quality
(start - end)
425 (78 - 502)---
definitionCHROMAT_FILE: MSMg01no470_c11.b1 PHD_FILE: MSMg01no470_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:58 2005CHROMAT_FILE: MSMg01no470_c11.g1 PHD_FILE: MSMg01no470_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTAGTCTACATTCACNNNNGANNCCTATTTTCACACCACCGCGGAANCN
CNCTGGTGANTCAGGAAGCCCAAACNTGCCTTTTCTTTTCCTTCGCATAT
TTGTTATTTGGCTTCACATCCTTTTCCAGAACAAGAATTTCTTTTTTATT
TGAAGAGGCTATGTTCTGAATGATGGTATTCTTTTAATCATCATCAGACT
AGAAAGGGAGACTCATTAGGGCCTTTAACTTCTTCTAATCAATGTTCCTG
AAAGCAATTTTTTTGAATAAATGAATTTCATATTTTACTGTGTGCCAGAT
TTTATTTCTCCCTTCTACTTAGAAGGGATAAATATGTTTTTTTGTATTTT
CCATTTTGCATTAGGGATATAATTGCTAAGAAATTATTGTTGCAGAGCAT
CTAGCAGTCATTTGGGCTATAGATGTTATATGTTACATATATTATATATT
TAACTGGCATCTTTGAATCATTTACTATAAAACACTGGGAGAACTTGTAC
CCTACAGTGCAGAGTGTTCGATATAATAAATTATGTATTAACTCAAGATA
TTTTACGACATCCCAATGCCAGATAGATTTGCACCCCACCTGAAGAGATA
GAAATAACCAACTGATGGAATATGCACTCACCTGCTACCGTGCATAGACA
TTGGCTACTTCCTTACAAGAACCACCCTTGCTATAGCTCACTATACCCCA
ATATCCCCCCCTCCGGCCTTACCA
CCGATGCTAGTGGGTAGGCCTGGGNGGCCGCCCGGCTGCAGCACCCCCAG
GNGACACTATAGCAAGGTCACCAGCCACCCCCCGCGGGNGNGCGCCGGGC
AGATCGTCAGAATATAACGATGCAATGACATGAATCGCATGAATAAATAA
CATAAATTACGATACGATAGATAGACTAGATATGATAGATCAGCATCAGC
ATAGATAGATCCCCCCCCCTCCCCTCCCCCCCCCCCCCCCCCCTTCCCCC
CCCCCCCCCTCTCCCCCCTCTCCCCCCTCCCCCCCCCCCTTTTTTTCCCA
CCCCCCCCTCTCCTTCCCCCCCCCTCCCCCCCCCCCCCTTCCTTCTCTTC
CCCCCCCCCCCCCCGCCCCCTTCGGCTGCGCTTCCCCCCCCCCCCCCCCC
CGACCCCCCCCCCCCCCCCCATCCTTTTTCTCTCTCCCCCCACCACCCTC
CCCCCCCCGCCTCCCCCCCCTCCTCCCTCCCCCGCTCCCTTCCCCTCCCC
CCCCCCTCCTCCCTTTCTCTCTTCCCCTCCTCCTCCCCCCCCCCCCTCCT
CCCCCCCCCTTCTACCCCCCTCTCCCCCCCCCTCCCCTCCTCCCCTCTTC
TTCCCTCCCTTCTTCCCCCCCCCCTCTTTCTCTCCTTCTCCCCCCCTTGC
CCCCCCCCGTTCCCTTCCGCCTCCCCCCCTCTCTCTCCTCCTCCTCTCTT
TTCCCCCCCACTCTCCCCGTCCCCCCCCTCCCCCTTTCCCCTCTCACCCC
CTCCTTCCTCCCTCCCTCCTCCCCTCTCTCCCCCCCCCTCCTCCCCCTTT
TCCCTCCCCCCCGCCCCCCTCCTTCCCCTCCCTTCCCCCCCCTCCCGCCC
TTCTCTTTATCTCTTTCTTTCTCCGCTCTCCTCCCCCCCCCCCCCTCTCT
CCCCCCCTCCCCCGCCTCCTCTCTCTCTCCCCCTCCCCTCTTTCTCTCCT
TCCCCTCCCTCTATTCTCGCCTCTCCCCCCCCCCCGTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_c11.b1 MSMg01no470_c11.b1 CHROMAT_FILE:
MSMg01no470_c11.b1 PHD_FILE: MSMg01no470_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:58 2005
         (425 letters)



>mm_chr10_71190650_71191478
          Length = 829

 Score =  706 bits (365), Expect = 0.0
 Identities = 413/429 (96%), Gaps = 6/429 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccttttcttttccttc-gcatatttgt-tatttggcttca-catccttttccaga-aca 56
           ||||||||||||||||| |||||||||  || ||||||||| |||||||||||||| |||
Sbjct: 201 gccttttcttttccttcagcatatttgcataattggcttcaacatccttttccagacaca 260

                                                                       
Query: 57  agaatttcttttttatttgaagag-gctatgttctgaatgatggtattcttttaatcatc 115
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 261 agaatttcttttttatttgaagacagctatgttctgaatgatggtattcttttaatcatc 320

                                                                       
Query: 116 atcagactagaaagggagactcattagggcctttaacttcttctaatcaatgttcctgaa 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcagactagaaagggagactcattagggcctttaacttcttctaatcaatgttcctgaa 380

                                                                       
Query: 176 agcaatttttttgaataaatgaatttcatattttactgtgtgccagattttatttctccc 235
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 agcaatttttttgaataaatgaatttcatattttactgtgtgccagaatttatttctccc 440

                                                                       
Query: 236 ttctacttagaagggataaatatgtttttttgtattttccattttgcattagggatataa 295
           |||||||||||||||||||||||| ||||||| |||||||||||||||||| | |||| |
Sbjct: 441 ttctacttagaagggataaatatggttttttggattttccattttgcattaagtatatga 500

                                                                       
Query: 296 ttgctaagaaattattgttgcagagcatctagcagtcatttgggctatagatgttatatg 355
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 ttgctaagaaattattgttgcagagcatctagcagtcatttgg-ctatagatgttatatg 559

                                                                       
Query: 356 ttacatatattatatatttaactggcatctttgaatcatttactataaaacactgggaga 415
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 ttacatatattatatatttaactggcatctttgcatcatttactataaaacactgggaga 619

                    
Query: 416 acttgtacc 424
           |||||||||
Sbjct: 620 acttgtacc 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 829
Length adjustment: 9
Effective length of query: 416
Effective length of database: 820
Effective search space:   341120
Effective search space used:   341120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)