BAC Information

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BAC

Clone NameMSMg01-470H13
Chromosome10 (Build37)
Map Location 88,096,149 - 88,249,546
singlet/doubletdoublet
Overlap geneLOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20
Upstream geneLOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik
Downstream geneSlc5a8, Tmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470H13.T7 (MSMg01no470_h13.b1)MSMg01-470H13.TJ (MSMg01no470_h13.g1)
ACCAG553466AG553467
length757759
length of high quality
(start - end)
134 (180 - 313)204 (330 - 533)
definitionCHROMAT_FILE: MSMg01no470_h13.b1 PHD_FILE: MSMg01no470_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:23 2005CHROMAT_FILE: MSMg01no470_h13.g1 PHD_FILE: MSMg01no470_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,096,149 - 88,096,282)(88,249,343 - 88,249,546)
sequence
TCATAATTTGAGGCGCTAAACGACNCCCACTTTCACAACACCCCGCAANT
CTGCGCGTTCCCACCAACCCCCGCGACTTGAAAAATGTCTTTTATGAAAA
CTGAAAAGGTTGTAATATTAAAGGATAGGGTTTACATAAAAGGCCAAAAA
TAAAAAACAAACAAGGAACGAAAACCAAGCAAAACAAAACAACACCAAAA
ACAATTAGGAAACCAAAATGGTGTTAGCAGAAAAGGCAGTTGTCTAGTTA
TTACCACTATTATGATCTTTACTTGAGGTTCTATGGAAGCGAAGCATGTT
TTCATGCATGCTATTAATCNTCTACCACTGCACTGCACCCTCAGCCCATG
ACATAAATAAATGCACTTTAAAAAGTAAAGTAAAGTAAAGCTTACAACCA
GTCTGGGAAACTCATGTCCAAGTAAGATAATGAGGGTTTCTTTGTGTAGC
CCTGGCTGTCCTGGAACTTGCCTGTAGACCAGGCTGGCCTCCAACTCAGA
GATCTGCCATCCTCTGCCTCCCGAGCGCTGCCATTAAAGATGCGAGCCCA
CACCAACCCACCAGTCTCTATCTGCTGCTATCCCTATCTCCATTACAGCA
CGCCCCCCCCCCACCTATGTCTACACCGCCCTTCCCCGCCCCCTCCCCAA
ATCTATGCCTCCGACCGCCCCCCTGCCCGCCCCTCCTTGGCCCCCCCACC
CTGTACGCCCACACCCACCGACCCTTTAATTCCCACACTCACGCCCCGCC
TCCTTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAACATCTCATGACGTAATTGTCCCCAGTTTA
CAAATGAGAACACTGGTAGAGGTAGGATTTTTAACTCAGACATTTCTGAC
TATAAAATCCTTTGTTCGAGTTCCAAAATTTATTGGCTTTAGCCTAATAT
AAATATTTCTTTGGTAGTGTAATGCGTTTTGTTTCAGCTCAGTGAATAGC
AGAGTGACCCTCATGAGTACCAGCATTTTGTTGGGTGGGTGGCCCCCGGA
TGGAAGGTGTACAAATGATATAGTTTATGAGGTCTGGTTAAGTTGTACAT
CAGTAATTTATTGTCTTATTGTAGGTGGCTGTGCAAAGCTTAAGCAGTAT
CAATTCAGATCTTTTAAGTTTTTATAACTCGTCAAACTCAGCATAGCTCA
GTAACTCCAGTGTTCAGGAATAGTATTTTTTAAAATTGGGTGAGCCAGGT
GTGATGGTGCATACCATTAATTCCAACACTTGGGAGAGAGAGGGAGGTGG
ATCTCTGATAGGTCACAGACAGCCTGGTTTATATAATGAGTATCAGGACA
GCCAGAGCTACCTAGTACAAAAACTTTGTCTTCACGAAAGAACATACCAG
GCAGCAAATTTTATTTTATTGGTTTGGGACCCACCCCTCACAGTCCGTTC
TCTCCCACCACTTTCCTACCTTTTCCTTGCTCCCCCAGCTTTCCTCATCT
GAAACTCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_h13.b1 MSMg01no470_h13.b1 CHROMAT_FILE:
MSMg01no470_h13.b1 PHD_FILE: MSMg01no470_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:23 2005
         (134 letters)



>mm_chr10_88095949_88096482
          Length = 534

 Score =  259 bits (134), Expect = 4e-74
 Identities = 134/134 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaacaaaacaacaccaaaaacaattaggaaaccaaaatggtgttagcagaaaaggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaacaaaacaacaccaaaaacaattaggaaaccaaaatggtgttagcagaaaaggcag 260

                                                                       
Query: 61  ttgtctagttattaccactattatgatctttacttgaggttctatggaagcgaagcatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtctagttattaccactattatgatctttacttgaggttctatggaagcgaagcatgt 320

                         
Query: 121 tttcatgcatgcta 134
           ||||||||||||||
Sbjct: 321 tttcatgcatgcta 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space:    66276
Effective search space used:    66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no470_h13.g1 MSMg01no470_h13.g1 CHROMAT_FILE:
MSMg01no470_h13.g1 PHD_FILE: MSMg01no470_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:23 2005
         (204 letters)



>mm_chr10_88249143_88249746
          Length = 604

 Score =  387 bits (200), Expect = e-112
 Identities = 203/204 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtctggttaagttgtacatcagtaatttattgtcttattgtaggtggctgtgcaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aggtctggttaagttgtacatcagtaatttattgtcttattgtaggtggctgtgcaaagc 345

                                                                       
Query: 61  ttaagcagtatcaattcagatcttttaagtttttataactcgtcaaactcagcatagctc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctaagcagtatcaattcagatcttttaagtttttataactcgtcaaactcagcatagctc 285

                                                                       
Query: 121 agtaactccagtgttcaggaatagtattttttaaaattgggtgagccaggtgtgatggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 agtaactccagtgttcaggaatagtattttttaaaattgggtgagccaggtgtgatggtg 225

                                   
Query: 181 cataccattaattccaacacttgg 204
           ||||||||||||||||||||||||
Sbjct: 224 cataccattaattccaacacttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)