BAC Information

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BAC

Clone NameMSMg01-470K23
Chromosome10 (Build37)
Map Location 51,373,373 - 51,373,622
singlet/doubletsinglet
Overlap genenone
Upstream geneAscc3, Sim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a
Downstream geneRfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470K23.T7 (MSMg01no470_k23.b1)MSMg01-470K23.TJ (MSMg01no470_k23.g1)
ACCAG553630AG553631
length765765
length of high quality
(start - end)
151 (176 - 326)252 (80 - 331)
definitionCHROMAT_FILE: MSMg01no470_k23.b1 PHD_FILE: MSMg01no470_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:40 2005CHROMAT_FILE: MSMg01no470_k23.g1 PHD_FILE: MSMg01no470_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTATATTTGXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGC
GGAATTCAAGGCCCATTCCCAAACATGATAAAATCAATCTACAGCAAACC
AGTAGCCAACATCAAAGTAAATGGTGAGAACCTGGAAGCAATCCCACTAA
AATCAGGGACTAGACAAGGCTGTCCACTCTCTCCCTAACCTATTCAACAT
TGTACTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGATCAAGG
GGATACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGAT
ATGATAGTATATATACGTGAACCTAATTAATTCCACCAGAGAACTCCTAA
GCCTCGTAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAGC
AAGTCAATGGCCTTTCTCTACATAAAGGACAAACAGGCTGGGAAAGAATT
AGGGAAACAACACCCCTTCTCATAGCCCCCAATAATATAAAATACCTAGG
TGTACTCCAACTAAGGAAGTGGAAGATTCGCATGACCAGAATTCCTGTCC
CGGGAAAAAAAAATTACGAAAATCCCCAAAAGGGAAGACCCTCCCTGCCT
CTGGATCCCCCGACCCACAATCCAAAAAAGGGTTTTTTTGGCCAAAAAAA
CTCAAGATATCCCGGCGCTCCCCCCCCAAAACCTCTCCCCCTCTCCTCCG
CAAAAAAACAGGGCCAACGCGGTCTTCTCCCGTTCCTACAACAACACCCC
CCTTGGCCTTACCCG
TTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCATCTTAGGGCAACCAAAT
CTTGGAATATATTTAGCATTTGAATACACCGTGGCATCAGAAATTCAAGC
TTTGTTTTCATGACTTAGACTAACTTCCTTATTTCACTATCTCCTTGTCT
TCTTTGAATTGTTTGTCCAGAATTATAGTCATTTGATTGAATTCTTTGTA
AGTTTGTCTATGTGATTTTTTTTCATTAGAAGTTGTTATTATAGGATCTA
TATTTGGAGGGAAGAGACATGTTATTTTGTTTTTTCNNCNNTTTTTTTTT
TGCTTTTTTGTTTTTTTTTTTTTCNTNTNNTTTTTCNTTTTTTTTTCCNT
TTCCCTTTTCTCTCCTCCCCCCCCCCTTTTTCTTCTCTCTCCTCCCCCCT
CCTCTCCCTTTTTCCCCCTCCCCTCCCCCCCCCCTTCTTTCCCTCCTCTC
CCTCCTCCTNTTTTTCTCCCCTTCCTCCCTTCCTTCCCCCCCCTTTTTCT
CCTCTCCTCCCCTTCTCCCTCCCCTCCCCTTTTCCTCCCCCCCTTTCTCC
CTCTCTCCCCTCCCCCTTTTCCCTTCTCTCCCTCCCCCCTCCTCTCTCTT
CCCCTTCCCTCTTTCTTTTCTTTTCTCCCCTCTCTCCCCCCCTCTTTCCC
CCCTCCCTTTCTCTCTCCCCTCTCTTTTCTTCCCTCCCTCTCTTCTTCCT
CTCCCCTTCTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_k23.g1 MSMg01no470_k23.g1 CHROMAT_FILE:
MSMg01no470_k23.g1 PHD_FILE: MSMg01no470_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:41 2005
         (252 letters)



>mm_chr10_51373173_51373824
          Length = 652

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatcttagggcaaccaaatcttggaatatatttagcatttgaatacaccgtggcatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctcatcttagggcaaccaaatcttggaatatatttagcatttgaatacaccgtggcatca 391

                                                                       
Query: 61  gaaattcaagctttgttttcatgacttagactaacttccttatttcactatctccttgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaaattcaagctttgttttcatgacttagactaacttccttatttcactatctccttgtc 331

                                                                       
Query: 121 ttctttgaattgtttgtccagaattatagtcatttgattgaattctttgtaagtttgtct 180
           |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 330 ttctttgaattgtttgtccataattatagtcattcgattgaattctttgtaagtttgtct 271

                                                                       
Query: 181 atgtgattttttttcattagaagttgttattataggatctatatttggagggaagagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atgtgattttttttcattagaagttgttattataggatctatatttggagggaagagaca 211

                     
Query: 241 tgttattttg 250
           ||||||||||
Sbjct: 210 tgttattttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)