BAC Information

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BAC

Clone NameMSMg01-472C09
Chromosome10 (Build37)
Map Location 12,871,267 - 13,047,579
singlet/doubletdoublet
Overlap gene4930519B02Rik, Ltv1, LOC666829, Phactr2
Upstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1
Downstream geneLOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472C09.T7 (MSMg01no472_c09.b1)MSMg01-472C09.TJ (MSMg01no472_c09.g1)
ACCAG554750AG554751
length730765
length of high quality
(start - end)
592 (70 - 661)405 (80 - 484)
definitionCHROMAT_FILE: MSMg01no472_c09.b1 PHD_FILE: MSMg01no472_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:41 2005CHROMAT_FILE: MSMg01no472_c09.g1 PHD_FILE: MSMg01no472_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,871,267 - 12,871,858)(13,047,175 - 13,047,579)
sequence
NNTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGGTATCACGCAATCTCCACTCTGTGCTCCCAGCCACCACTA
AGCTCTGGAAAAAAGGGTGAGGAATGGGGCCAAGTCACTGGTTACGCTCA
GGATAGCCAGCTGGCCTTTTTCACAAATAAAAACTACTTCTGTTTGCTGG
TTCCCTTCGCCCTCTTTGGCCCCTAATACTAATACTGGCAAGCTCCGTGG
AGTGGATAGAACCATCTGTGATAATAACAGTTGCTGGTACTGCTGTTCCG
GGTGGAAGAAGCGCTGATTATACAGACTTCTCCACACTTAGGTTGGATTC
AAGCCTAAAGCTGCCAGAGTCCTTCAAAATTGTGATTTTCAAGACCAGCA
AGAGGAAAGGGCTTTTGGAAAGGGAAAGGACAGCCGAGGAAACTTCTGGG
CCAGTCCCTTACTCCCAACAACTCCTCCAGTTATGGGGGATTAGTGTTAT
TTGCAGGCGAAAGTAAATCTCAAACCTTGCCTACAAATAACCAATCATAC
AATGACAATGGGAAATCGAACCCTCTCCACCAACCACCAAGTCCCAGATG
TCTTGACCTTACACCTACCCCAAACTATCTCAGCTTGGAAGACTGACTCT
AACTTGCATTCACCACCTGCCCAGCACACAAGCATCCTCCTTCAGGTTTA
GAACAGTTCTAACCCAAAGCCTAGTCTTCN
CTTCGATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTTAATTCTTCTCTCCACC
ATGAGAACCTACCTCCAAGTTCTGGAGTGGCAGTGGCTAGAGAGATCTGG
CAGATCTGAGGAAGATGGAGACCCAGGATTAGAACTTATGGTGTCTGAGT
TCTTCCCTATATATGCTCAAAACTCTCCTCCAGTCACCAAATTTTATTTC
TGCAAAGTGGACCCTGAGCTTCTAGGAGAGGAGTTTGTCATAGTCTAGGT
TTGTAAGGGCCAGGTTGATGTCTGCTTTAATTTACCATAGTGCCTTCTGT
CTATGAAAAGTACGGTTGTCACTTTGGATACCCCAGATGGCTGAGTTTAA
TAACGCCCACATCAGACAAGTCAGGGAAATCTGAGTGATGGGGCAAAGTG
TTTGAAAATCTCCCAAGTACAAGTGCTTGGTCCTAAAAGCACACTGTCTC
CCAGGGGATATTCTATGTAAGTCCTCTCGATTTCATTTCTTCCTGGAAGT
AAATGAATAACTCATAGTTCTTTCACGGATTGAATCTAGACTGTGCAGTG
TTGATCGTTTCTCCTCCTTAATTGTTTTCGTTTATGTGCTCAGGATTGTA
TTTCATTTTTCCTTCCCCCTCCTCCTTCATGTTTTCCTTTTTTTTTTTCC
TCTTCCTCTCTCCCTTTTGCTACTTTCCCCCCCTTCATCTTTCTTCACTT
TTTTCTCTCTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_c09.b1 MSMg01no472_c09.b1 CHROMAT_FILE:
MSMg01no472_c09.b1 PHD_FILE: MSMg01no472_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:41 2005
         (592 letters)



>mm_chr10_12871067_12872058
          Length = 992

 Score = 1075 bits (556), Expect = 0.0
 Identities = 583/592 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatctccactctgtgctcccagccaccactaagctctggaaaaaagggtgaggaatgggg 60
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 201 aatctccactctgtgctcccagccaccactaagctctggaaaaaggggagaggaatgggg 260

                                                                       
Query: 61  ccaagtcactggttacgctcaggatagccagctggcctttttcacaaataaaaactactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaagtcactggttacgctcaggatagccagctggcctttttcacaaataaaaactactt 320

                                                                       
Query: 121 ctgtttgctggttcccttcgccctctttggcccctaatactaatactggcaagctccgtg 180
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ctgtttgctggttcccttcaccctctttggcccccaatactaatactggcaagctccgtg 380

                                                                       
Query: 181 gagtggatagaaccatctgtgataataacagttgctggtactgctgttccgggtggaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtggatagaaccatctgtgataataacagttgctggtactgctgttccgggtggaaga 440

                                                                       
Query: 241 agcgctgattatacagacttctccacacttaggttggattcaagcctaaagctgccagag 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcgctgaagatacagacttctccacacttaggttggattcaagcctaaagctgccagag 500

                                                                       
Query: 301 tccttcaaaattgtgattttcaagaccagcaagaggaaagggcttttggaaagggaaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccttcaaaattgtgattttcaagaccagcaagaggaaagggcttttggaaagggaaagg 560

                                                                       
Query: 361 acagccgaggaaacttctgggccagtcccttactcccaacaactcctccagttatggggg 420
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 acagccaaggaaacttctgggccagtcccttactcccaacaactcctccagttatgggag 620

                                                                       
Query: 421 attagtgttatttgcaggcgaaagtaaatctcaaaccttgcctacaaataaccaatcata 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attagtgttatttacaggcgaaagtaaatctcaaaccttgcctacaaataaccaatcata 680

                                                                       
Query: 481 caatgacaatgggaaatcgaaccctctccaccaaccaccaagtcccagatgtcttgacct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caatgacaatgggaaatcgaaccctctccaccaaccaccaagtcccagatgtcttgacct 740

                                                               
Query: 541 tacacctaccccaaactatctcagcttggaagactgactctaacttgcattc 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tacacctaccccaaactatctcagcttggaagactgactctaacttgcattc 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no472_c09.g1 MSMg01no472_c09.g1 CHROMAT_FILE:
MSMg01no472_c09.g1 PHD_FILE: MSMg01no472_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:41 2005
         (405 letters)



>mm_chr10_13046975_13047779
          Length = 805

 Score =  768 bits (397), Expect = 0.0
 Identities = 403/405 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttaattcttctctccaccatgagaacctacctccaagttctggagtggcagtggcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tatttaattcttctctccaccatgagaacctacctccaagttctggagtggcagtggcta 546

                                                                       
Query: 61  gagagatctggcagatctgaggaagatggagacccaggattagaacttatggtgtctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gagagatctggcagatctgaggaagatggagacccaggattagaacttatggtgtctgag 486

                                                                       
Query: 121 ttcttccctatatatgctcaaaactctcctccagtcaccaaattttatttctgcaaagtg 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 485 ttcttccctatatatgctcaaaactctcctccagtcaccaaattgtatttctgcaaagtg 426

                                                                       
Query: 181 gaccctgagcttctaggagaggagtttgtcatagtctaggtttgtaagggccaggttgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaccctgagcttctaggagaggagtttgtcatagtctaggtttgtaagggccaggttgat 366

                                                                       
Query: 241 gtctgctttaatttaccatagtgccttctgtctatgaaaagtacggttgtcactttggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gtctgctttaatttaccatagtgccttctgtctatgaaaagtacggttgtcactttggat 306

                                                                       
Query: 301 accccagatggctgagtttaataacgcccacatcagacaagtcagggaaatctgagtgat 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 305 accccagatggctgagtttaataacgcccacatcagacaagtcagagaaatctgagtgat 246

                                                        
Query: 361 ggggcaaagtgtttgaaaatctcccaagtacaagtgcttggtcct 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggggcaaagtgtttgaaaatctcccaagtacaagtgcttggtcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)