BAC Information

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BAC

Clone NameMSMg01-472C10
Chromosome10 (Build37)
Map Location 58,019,145 - 58,019,390
singlet/doubletsinglet
Overlap gene6230424H07Rik
Upstream geneLOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2
Downstream geneLOC100038981, Edar, LOC624335, LOC100039099, Sh3md4, Sept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472C10.T7 (MSMg01no472_c10.b1)MSMg01-472C10.TJ (MSMg01no472_c10.g1)
ACCAG554752AG554753
length759752
length of high quality
(start - end)
246 (70 - 315)604 (81 - 684)
definitionCHROMAT_FILE: MSMg01no472_c10.b1 PHD_FILE: MSMg01no472_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:41 2005CHROMAT_FILE: MSMg01no472_c10.g1 PHD_FILE: MSMg01no472_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATACAAAGAGGATGCC
GCGGAATCTTCTTCTCCACTCACCCAGTTCACTTAGTGCTGCCCGAATGT
GTGTGGGTGCAGAGCCATCTCCTGGAATGTGAGTGGTTTCCCAGGCCACA
TCCTCTCCTTCAGTTGCCACTAGTTACCTAGGTGTAGGATTCTGTAGCCT
ACCTTTTTCCCATCCATGCTGAGCCCATGTCTTTTAATCACAAATGTATT
TTATTTAACTTCAGATCCATATGTATAGACTAAGTCTGTTATTTTAAAGT
GGTCTGTGTATCTTTAATTTTTAAAACAAACAACTTTTTAGCCAGTCAGC
ACTTAAACATGATATCAATGGAATGTTTCATTCATTTATATTTGCCACTG
CAAATATTAACATAGACTTATACATGCCTTAGCATTTTTAAAATGTGCAA
TAAACTAACCAATTTGACACTGATGTATGAAAGGATATGAAAGGATTTTA
GCAGACATTGCCATCTTTCTCAAAAAGTGAGACTATTATATCCTTTCCTC
TAGTGTGTGTGTGTGCGCGTGTGTGTGTGTGTTTGTTTTTCCATACTTTT
TTTTCCCTCCTCTGTCTCCTCTTTCTCTTTCTTCTTTCCTTCCCTTTTCT
CTTTCCTCCCTACTCTTACTTCTCCTTATTCCTCCCCCCTCGCCCTTTCC
CTCTTTTTATTTTCGTCTCTCGCCACGTTTATATTCCTGCTCCTCTTCTC
TTTTTTTCG
NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATG
ATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGA
GAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCAC
TTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCTAGAGCAATT
CGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAGGAAGTAAA
AATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAA
TTCCACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTG
GATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAAT
AAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCAC
AAATAATATAAAATATCTCGGCGTGACTCTAACTAAGGAAGTGAAAGATC
TGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTC
AGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAATATTGT
AAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCCATCCCCA
TCAAAATTCCAACTCCATTCTTCTACGAATTAGAAGGAGCAATTTGCAAA
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_c10.b1 MSMg01no472_c10.b1 CHROMAT_FILE:
MSMg01no472_c10.b1 PHD_FILE: MSMg01no472_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:41 2005
         (246 letters)



>mm_chr10_58018945_58019590
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacccagttcacttagtgctgcccgaatgtgtgtgggtgcagagccatctcctggaatg 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacccagttcacttagtgctgccctaatgtgtgtgggtgcagagccatctcctggaatg 260

                                                                       
Query: 61  tgagtggtttcccaggccacatcctctccttcagttgccactagttacctaggtgtagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagtggtttcccaggccacatcctctccttcagttgccactagttacctaggtgtagga 320

                                                                       
Query: 121 ttctgtagcctacctttttcccatccatgctgagcccatgtcttttaatcacaaatgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgtagcctacctttttcccatccatgctgagcccatgtcttttaatcacaaatgtat 380

                                                                       
Query: 181 tttatttaacttcagatccatatgtatagactaagtctgttattttaaagtggtctgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatttaacttcagatccatatgtatagactaagtctgttattttaaagtggtctgtgt 440

                 
Query: 241 atcttt 246
           ||||||
Sbjct: 441 atcttt 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)