BAC Information

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BAC

Clone NameMSMg01-472E09
Chromosome10 (Build37)
Map Location 70,933,691 - 70,933,935
singlet/doubletsinglet
Overlap genenone
Upstream gene1200015N20Rik, LOC665398, Phyhipl, EG665429, Bicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk
Downstream geneLOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik, LOC100040505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472E09.T7 (MSMg01no472_e09.b1)MSMg01-472E09.TJ (MSMg01no472_e09.g1)
ACCAG554846AG554847
length736767
length of high quality
(start - end)
265 (51 - 315)387 (83 - 469)
definitionCHROMAT_FILE: MSMg01no472_e09.b1 PHD_FILE: MSMg01no472_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:51 2005CHROMAT_FILE: MSMg01no472_e09.g1 PHD_FILE: MSMg01no472_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTATTTTCACGTTTTTTAGTAAATCAGACAAAGAGGCAAG
TGTCAGGAAGAGCCCATGCAACGCTGACCTGCGTGTGAACCAGGTATGAT
TTTCTAGGACACAGTACCTTGCAGAAGGTGTGTAACATCAGTGTGCCCAA
CCCCCCGCTCTGTGGGATGATGCTGGAGCTCTGTTCAAGAGCTGTGTGAG
AAGGTATCGGACTGTGAGTTGCTGCGCTCACCTATTTAATGAGACTACCT
TAGAAGGAGTGAAAATTTTTATCTGGTAACATGAAAGAAGGCAGAGTTAA
GGAAGTGAATAAAAACTACCAGTCCGGGGCCCAATAAGATACTGGTTGCT
GTGTAGCATGATTTTATTTCCTCCTCTCAATAAGCCTGGGGTAGGCAGTA
TGTTCCTTTATACACAAAAGCCTGGAGAGCAAGTAGCTGGCATGGAGGAC
CACTGCCTCTAAGCAGCTTGGTTGAGAACAAAGAAGGGTGGAGCTTGGGG
TACGTCATTAGCTCCGGACCATGTGGGACATCACGTGGGATCTGATATCT
TCCTCTGGCGTGTCCCAAAAAAGCCGCAATTTATTTCTTTTTTTTTTCTC
CTCCCTTTTTTTCATCTACGGTCAGGATTACTTATTTTTCGGCCATTGCA
ATTTATACCCCCATTTTCTCCCCCTTCTCTTCTTGT
NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACACGAGGAATACCGA
ATGGCAGAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGG
CTAAGATCAAAAACTCAGGTGACAGCAGATGTTGGAGAGGATGTGGAGAA
AGGGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACT
CTGGAAATCAGTATGGCGGTTTTNCTGATTTATTGGACATAGTACTACCG
GAGGATCGCAATACCTCTTCTGGGCATATATCCAGAAGATGTCCCAACCG
GTAAGAAGAACACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATTTACTCCATGGAATACTACTCGGCTATTAAAAAAA
TGAAATTATGATATTCCTTAGGCCAATGGAAGGACCTATAAGGCTATCTT
CCTGACTGAAACCACCCCGTCTCCCATAGGAATTTGCCAAAAATAGACCC
CCTGGATACTGGTTTTTTTTTTCCCAACCTTCGAAAACCCCCTGACTTTA
TATGTTCACCTGGCCCACCCCTTCGAACATTCTCAAACAACCAACCATTC
CCTTGGTGTTTTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_e09.b1 MSMg01no472_e09.b1 CHROMAT_FILE:
MSMg01no472_e09.b1 PHD_FILE: MSMg01no472_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:51 2005
         (265 letters)



>mm_chr10_70933471_70934135
          Length = 665

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 21  gttttttagtaaatcagacaaagaggcaagtgtcaggaagagcccatgcaacgctgacct 80
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 221 gttttttagtaaatcagacaaagaggcaagtgtcaggaagagtccatgcaacgctgacct 280

                                                                       
Query: 81  gcgtgtgaaccaggtatgattttctaggacacagtaccttgcagaaggtgtgtaacatca 140
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gcgtgtgcaccaggtatgattttctaggacacagtaccttgcagaaggtgtgtaacatca 340

                                                                       
Query: 141 gtgtgcccaaccccccgctctgtgggatgatgctggagctctgttcaagagctgtgtgag 200
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gtgtgcccaacccccagctctgtgggatgatgctggagctctgttcaagagctgtgtgag 400

                                                                       
Query: 201 aaggtatcggactgtgagttgctgcgctcacctatttaatgagactaccttagaaggagt 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 401 aaggtatcggactgtgagttgctgcgctcacctatttaatgagactaccttagaaggagc 460

                
Query: 261 gaaaa 265
           |||||
Sbjct: 461 gaaaa 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)