BAC Information

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BAC

Clone NameMSMg01-472J09
Chromosome10 (Build37)
Map Location 13,865,229 - 13,865,749
singlet/doubletsinglet
Overlap geneHivep2
Upstream gene4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859
Downstream geneGpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472J09.T7 (MSMg01no472_j09.b1)MSMg01-472J09.TJ (MSMg01no472_j09.g1)
ACCAG555084AG555085
length750760
length of high quality
(start - end)
508 (67 - 574)520 (81 - 600)
definitionCHROMAT_FILE: MSMg01no472_j09.b1 PHD_FILE: MSMg01no472_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:16 2005CHROMAT_FILE: MSMg01no472_j09.g1 PHD_FILE: MSMg01no472_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTACCCAGGGCTATACATAGAAACCCTGTCTTGAA
AAACAAAAAACAAAACAAAAAAAATTTAAAGAGAATTGACCATAATGGCT
AATTAGGGGTGCAATTTGACTGCATTAGTAATGTATCGTTTCTGAATGTG
ACTATGAAAATGTGTCTGTAAGAGACTGGCATTTATAGTAGCAGGCTAAG
TAATGAAGATCCAGCACTGCCCAATATAACATGTGGGTATCATCCAATGC
ATTAAAGGCTTAATAGAACATTTTGGCAGAGTAAATATTCTCATATATTC
TCTCTTTCTCCCTAAGGATCTATCTATCGATCGATTGATCTCTATCTAGC
TACCTACCTACCTATCTATTTTCACCAGCCCTCCCTTCCTCTATTTCTTC
CTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTCCTTCCCTCCTTCCCT
ACCTTTCTCCCTTCCTCCTTTGCTCTACTGTAGCTGGAAAGTTTTATGCT
GTTGCAAGACTCTTGGACGCTGGGTTTGTGTTTTCTCCAGCATGGGCTGT
AGAACTTGAGCAAAAGCCCTTGGGCTCCTTCAGGTGCTTGGGGATCTCAC
CTTTCCACTTCAGAAATCACTCTGCCACAACTGTTCTTCCCTCTCCCTTC
CCCTATAATTTAAATTATACTCCATAGTAATATTTTGTATTTTGTTTTTG

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAACTAATTAAGAATAAA
ATAAAACAGAATAAAATAATTCATTTATTTTGGACCTTTGAATCCCTACA
AAGTTAATTAAGAAATTTAGTGCCAAACAAGAAAATAAGTTTCACCAGTT
ACTGAGTTTTTCCTAAATTTTTGTGTGGTTTTATTTCATTTCATTTTGTT
CCTAAAATCTCTGGATGCCTCACAGAGCTCATCCTTCATCCCCAACAAAT
CCTCTGGCTTGCTACCCAGTCCTTTTATCTTTAAAGAAAAAATGCCCCCT
TGCTGCTTGTTCTCATAGGAGGCAGCAGAGCTGGGATTCAAGCAGGAGCC
CTGTCCTGAGTCCTCATGTTGTGTTGACTGGTCGCCTCTGGATGGCAGTG
ACAACTATATCTTTCTGTGATGTGTGAAAGAGACATTTCTGGTCAGAGAA
AAATAGACCTGACCATGCTCTGACAGGTGTCCCTCCTGACTGCTCTGTAN
GATGAAGACTTTCCTCTCTCTAAAAAATGTATAGAAAGGATTATGACCAG
NCATTGTCCCTTGTCACAGAAATTCTGTCCTGCTACCTTGTCATTTTGGA
CACCTTGTAGGAAGCTTTACAGGGCAATGACTGGGGTGAAGGGACCGTGA
CACCCACGAAGGACTAAAAATTAATTGGGTTAGCCCGGAACTTAAACCCC
AAAAATAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_j09.g1 MSMg01no472_j09.g1 CHROMAT_FILE:
MSMg01no472_j09.g1 PHD_FILE: MSMg01no472_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:16 2005
         (520 letters)



>mm_chr10_13865029_13865949
          Length = 921

 Score =  955 bits (494), Expect = 0.0
 Identities = 514/521 (98%), Gaps = 1/521 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaactaattaagaataaaataaaacagaataaaataattcatttattttggacctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaactaattaagaataaaataaaacagaataaaataattcatttattttggacctttg 260

                                                                       
Query: 61  aatccctacaaagttaattaagaaatttagtgccaaacaagaaaataagtttcaccagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatccctacaaagttaattaagaaatttagtgccaaacaagaaaataagtttcaccagtt 320

                                                                       
Query: 121 actgagtttttcctaaatttttgtgtggttttatttcatttcattttgttcctaaaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgagtttttcctaaatttttgtgtggttttatttcatttcattttgttcctaaaatct 380

                                                                       
Query: 181 ctggatgcctcacagagctcatccttcatccccaacaaatcctctggcttgctacccagt 240
           |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 381 ctggatgcctcacagagctcatccttcatccccaccaaatcctttggcttgctacccagt 440

                                                                       
Query: 241 ccttttatctttaaagaaaaaatgcccccttgctgcttgttctcataggaggcagcagag 300
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagttatctttaaagaaaaaatgcccccttgctgcttgttctcataggaggcagcagag 500

                                                                       
Query: 301 ctgggattcaagcaggagccctgtcctgagtcctcatgttgtgttgactggtcgcctctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgggattcaagcaggagccctgtcctgagtcctcatgttgtgttgactggtcgcctctg 560

                                                                       
Query: 361 gatggcagtgacaactatatctttctgtgatgtgtgaaagagacatttctggtcagagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatggcagtgacaactatatctttctgtgatgtgtgaaagagacatttctggtcagagaa 620

                                                                       
Query: 421 aaatagacctgaccatgctctgacaggtgtccctcctgactgctctgtangatgaagact 480
           |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 621 aaatagacctgaccatgctctgacaggtgtcccttctgactgctctgtaggatgaagact 680

                                                    
Query: 481 ttcctctctctaaaaaa-tgtatagaaaggattatgaccag 520
           ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 ttcctctctctaaaaaaatgtatagaaaggattatgaccag 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 921
Length adjustment: 10
Effective length of query: 510
Effective length of database: 911
Effective search space:   464610
Effective search space used:   464610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)