BAC Information

Click to search

BAC

Clone NameMSMg01-472N07
Chromosome10 (Build37)
Map Location 127,555,401 - 127,555,814
singlet/doubletsinglet
Overlap geneBaz2a
Upstream geneOs9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, LOC100043085
Downstream geneRbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472N07.T7 (MSMg01no472_n07.b1)MSMg01-472N07.TJ (MSMg01no472_n07.g1)
ACCAG555272AG555273
length774741
length of high quality
(start - end)		417 (52 - 468)240 (80 - 319)
definitionCHROMAT_FILE: MSMg01no472_n07.b1 PHD_FILE: MSMg01no472_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:36 2005CHROMAT_FILE: MSMg01no472_n07.g1 PHD_FILE: MSMg01no472_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCACCTTTCGAATGTGTACTGCTATACTGAGAGTGGAAAT
GTGGGAAATGGAACATGAAGCAGGTTGTAAAAAAGTCAGCCCACTGATGT
CCCTTACCTGCCCTTGGACAGGAGTCTGATTTTCTCCCCGTTGGACCTTC
TGCCTCATCTTCTTTTTGTTTTTAGTCATCTTTGCTTTATCGTCCTCACT
CAGTATTTCTGTGACGGCAAGAAGGAAGTTGAAAGAAATCAGGTAGAAAC
CATGCTGGGCACCCGTGGCTTTACATGTCTAGGACAAAGCTGGCTTCTCA
TGCAGCTCCTTGAATGGCTGTTTTTTTAGTGGACATAATAAAACATTAAG
AGAGATGGGTGAGAGGCATCTGCTGAGGCGGTGTATACAGCGCTCACACA
GCACTGCCAGCCCAGGAGCCACACAGACTGACGACAACTCAACGGCTTTA
GAAATGGTCCAGCTGATGGAAAGGAAGCTACAACTGCAGAATACCTTTAT
AATCTGTCGCTTTCCCTGGGTCTGCAGCAAGGTGAACAATGGCTGGTATT
GATGCACACCCGCCTGGACTTTATTGCTAAAAAGAAGTTGAAAAAAAAAA
ACCTTGTAATCTTATCCTGGTCTCGGAATAAAAAGATTTATCGCTTTTCC
TTAAACTACCTCGGCACCTCCTAATTGTTTCCCTCTATTAAAATACATAG
GGACACTCTTCTCTAACACACTTN

NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCATTGTGGAAAAACAAG
AGAAAATAGATATTCATGTCTGTCCTACCATACCCCTGATTGGTTTAGGC
TTGGGTGGTGGTAAGATGCCAAAGCTCTTACATTCAGACTCCGTCGTAGA
GACCCTGACCTAAGTTTGAACTCAGGTAAACCAACAGGCTGGTACCTAGC
ATTAATTTCCAAGTTGCCCCCCAACAAAACCTGAGCCTAGCTGCAGTCTC
TAAGCTAATCCCCAACAAGATTTGTCTTTCCAGGTTACTCCCTTAACAAG
ACCAGTGTCTCCAGGTTATTCCCCCCAACAAACCTGCACCCATGTTCCAA
GCCCACCCCCTGCCTAACGACCACCAGTGCAGAGGGAGCAGACTGTCTGA
CTCCCAGCACCAACCAATCATGTTAAAAGCCACAGGAGCTTTTCAATTAG
ATGCTTGCACACACATTCCCTGCTTGCTACTTTCTATAAAGCCCTGCCTC
GATAGACATTCAGGGCTCCCCCACCACTGTGTGATGGCGGTACGTTGTGG
GGGAGGTTCCCGGTCGGTTTGAGTACCCTTTTCTAAATAAAGCCCCTGCT
TTTTTTTTCTTCAATGGCTCCTGGGTGGGTGCGAGTGTTACCTCTTATTC
CATTTTGTCCCTTGACACACGGTATATTCCGTTCTTTGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_n07.b1 MSMg01no472_n07.b1 CHROMAT_FILE:
MSMg01no472_n07.b1 PHD_FILE: MSMg01no472_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:36 2005
         (417 letters)



>mm_chr10_127555198_127556014
          Length = 817

 Score =  743 bits (384), Expect = 0.0
 Identities = 407/416 (97%), Gaps = 4/416 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccacct--ttcgaatgtgtactgctatactgagagtggaaatgtgggaaatgga 61
           ||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggaattccacctagt--gaatgtgtactgctatactgagagtggaaatgtgggaaatgga 560

                                                                       
Query: 62  acatgaagcaggttgtaaaaaagtcagcccactgatgtcccttacctgcccttggacagg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acatgaagcaggttgtaaaaaagtcagcccactgatgtcccttacctgcccttggacagg 500

                                                                       
Query: 122 agtctgattttctccccgttggaccttctgcctcatcttctttttgtttttagtcatctt 181
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agtctgactttctccccgttggaccttctgcctcatcttctttttgtttttagtcatctt 440

                                                                       
Query: 182 tgctttatcgtcctcactcagtatttctgtgacggcaagaaggaagttgaaagaaatcag 241
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 439 tgctttatcgtcctcactcagtatttctgtgaaggcaagaaggaagttgaaagaaatcag 380

                                                                       
Query: 242 gtagaaaccatgctgggcacccgtggctttacatgtctaggacaaagctggcttctcatg 301
           |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 379 gtagaaaccatgctgggcacccgtggcagcacatgtctaggacaaagctggcttctcatg 320

                                                                       
Query: 302 cagctccttgaatggctgtttttttagtggacataataaaacattaagagagatgggtga 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cagctccttgaatggctgtttttttagtggacataataaaacattaagagagatgggtga 260

                                                                   
Query: 362 gaggcatctgctgaggcggtgtatacagcgctcacacagcactgccagcccaggag 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gaggcatctgctgaggcggtgtatacagcgctcacacagcactgccagcccaggag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |