BAC Information

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BAC

Clone NameMSMg01-473C23
Chromosome10 (Build37)
Map Location 96,089,837 - 96,090,242
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628119, Eea1, EG432491, LOC667380, Btg1
Downstream geneLOC628256, 4930556N09Rik, EG667407, Dcn, Lum, Kera
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473C23.T7 (MSMg01no473_c23.b1)MSMg01-473C23.TJ (MSMg01no473_c23.g1)
ACCAG555544AG555545
length760778
length of high quality
(start - end)		596 (76 - 671)477 (79 - 555)
definitionCHROMAT_FILE: MSMg01no473_c23.b1 PHD_FILE: MSMg01no473_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:08 2005CHROMAT_FILE: MSMg01no473_c23.g1 PHD_FILE: MSMg01no473_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGC
GGAATTCTACTAGACTTCCAAGAAGAAATAATCCAATATTCCTTAAACTA
CTACACAAAATTGAAACAGAAGGAACATTGCCAAATTCATTCTATGAGGA
CACAGTCACCCTGATACTTCAAACACACAAGAATCAACAAAGGAGTTTCA
GACCAATTTCTCTTATGGACATTGATGCAAAAATACTCAATAAAACAGTC
ACAACTGAATCCTAAAACACACCAAAAACATCATCCACCATGATCAAATA
GGGTTCATCCAGGGATGCAAGGATGGTTCTATACATGAAAATCCATCTTA
ATATTCCACCATATAAACAAACTGAAAGAAAAAAGCCACATGATCACTTC
ATTAGATGCTGAAATGGCCTTTGACAAAATCAAACACCACTTCATGTAAT
AAGTCTTGGGGAGATCAAGGATACAAGGTCCATACTTAAACATAATAAAG
GCAATATATAGCAAGTCAATAGTCAACATCAAGTTAAATGAAGAGAAACT
TAAATTTCCACTAAAATCAGGGACCAGATAAGGCTGCACACTCTCTGACA
ATCTATTCAACATAGTACCTGAAGTTCTAGCTAGAATAATAAGAAAACTA
AAGGAGATAAAAATTGGAAAGTCCAAATATCATTAGTTGCAGGTGATATA
AATTATACATCTTGGGACCCACAAATTATACCATTGGAATTCTTTAGCTG
ATAAACAACN

TTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGGACTGAGGCAGAAGCAGG
AGGACTGGCACTGACGTTCAAGGCCATCCTCAGCTACATAGAGATTCTGA
GGCCAGCCTGGGATACGCGAGACCCTTTCTCAAAAGCAAACACAAGGCCT
ATTTAAACCTAACCTTGACTGGAGGCCTCCGTGGTTAGGAGCACCCCGCT
GTTCATACAGAAGAGCCAGGCTTGGCTCCCAGACCCCAGTGTGGCAGATC
CCAGTCCTTCCTAACTCCAGTTCCAGGGAGTCTGACCTTCATCGGCATCT
GAGTTGTGCTGTTTCCTAAGGTAGGACCGTGATGCTAAAATGACTGATAG
ATCTCGTCGCTCAAGCCGAGAGCTATCTTTTCTTGCTAAACCTTTAAACT
GCAGGACAGCCATTACCTGCGTCAGGAAAATCAGAAAACCTCACTGCCCC
ACGAAAGCCCCCCACCCCCACCCCCAGCTTAGAATTCTGAGTCCATTCTG
AACCTGCTGAGGTATCATGTGTCCTTGTAACATTCTCAGGAAGGCCAAAA
GATGTTGCTCTCCTTTTAAAGTTAATACTGTGGACAGAGGCCACCAAGGG
GAAATGGGCCATAGTCCTGGGCCAAGCTCGGGACCTTACTCCACGGGATC
CTTTTCCCCCCAGGAAGTCACCGCTGGGATGAAAAATGTGTCAACCTTAA
GGGGTGGGCAACTTTAACCTCGCGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_c23.g1 MSMg01no473_c23.g1 CHROMAT_FILE:
MSMg01no473_c23.g1 PHD_FILE: MSMg01no473_c23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:08 2005
         (477 letters)



>mm_chr10_96089364_96090242
          Length = 879

 Score =  692 bits (358), Expect = 0.0
 Identities = 394/406 (97%), Gaps = 2/406 (0%)
 Strand = Plus / Minus

                                                                       
Query: 74  gccagcctgggatacgcgagaccctttctcaaaagcaaacacaaggcctatttaaaccta 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gccagcctgggatacgcgagaccctttctcaaaagcaaacacaaggcctatttaaaccta 820

                                                                       
Query: 134 accttgactggaggcctccgtggttaggagcaccccgctgttcatacagaagagccaggc 193
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 accttgactggaggtctccgtggttaggagcaccccgctgttcatacagaagagccaggc 760

                                                                       
Query: 194 ttggctcccagaccccagtgtggcagatcccagtccttcctaactccagttccagggagt 253
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 759 ttggctcccagaccccagtgtggcagatcccaatccttcctaactccagttccagggagt 700

                                                                       
Query: 254 ctgaccttcatcggcatctgagttgtgctgtttcctaaggtaggaccgtgatgctaaaat 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ctgaccttcatcggcatctgagttgtgctgtttcctaaggtaggaccgtgatgctaaaat 640

                                                                       
Query: 314 gactgatagatctcgtcgctcaagccgagagctatcttttcttgctaaacctttaaactg 373
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 639 gactgatagatctcgtcgctcaagccgagagctatcttttcttgctaaacctttaaaaag 580

                                                                       
Query: 374 caggacagccattacctgcgtcaggaaaatcagaaaacctcactgccccacgaaag-ccc 432
           ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||
Sbjct: 579 caggacagccattacctgcatcaggaaaatcagacaacctcactgccccacgaaagaccc 520

                                                         
Query: 433 cccaccccc-acccccagcttagaattctgagtccattctgaacct 477
           ||||||||| | |||| |||| ||||||||||| ||||||||||||
Sbjct: 519 cccaccccccaaccccggcttggaattctgagtacattctgaacct 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 879
Length adjustment: 10
Effective length of query: 467
Effective length of database: 869
Effective search space:   405823
Effective search space used:   405823
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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