BAC Information

Click to search

BAC

Clone NameMSMg01-473G10
Chromosome10 (Build37)
Map Location 114,534,172 - 114,534,420
singlet/doubletsinglet
Overlap geneTph2
Upstream geneTrhde, 4930473D10Rik
Downstream geneTbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473G10.T7 (MSMg01no473_g10.b1)MSMg01-473G10.TJ (MSMg01no473_g10.g1)
ACCAG555709AG555710
length779808
length of high quality
(start - end)
249 (73 - 321)245 (75 - 319)
definitionCHROMAT_FILE: MSMg01no473_g10.b1 PHD_FILE: MSMg01no473_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:28 2005CHROMAT_FILE: MSMg01no473_g10.g1 PHD_FILE: MSMg01no473_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAATCTCTCACGCACTAGTGATATATAATTATTTGTAAATATTT
TATTTGAATATAATTACATATAATCATTAGCTTAAAACCAAAACAGGAAT
GATAGATGGGGCCTCTTCCGCAGAAGAAAGCAGAGTAATTTACATTCACA
GTCATTAAGCGGAAAAAGACAGCCTGAGTGTCGACAATCTGAACTCTGAA
GGGCTGTGGAACACACCTAGGGAGGGCTCAGGGAAAAACAGATAGGGTGC
ACAATGCTGCCATCTTCAGATCTCTGAGAGTAATACACCACTCTCAAGAC
ATACCAGCCTGATAGAGAGCAATCAAAGTTTGAAAGAACCAAGTCTGCAA
AATGGATGGAACGTGAGAATATCATCCTGAGTGAGGGGACTCAGTCACAA
AGGAACAAACACGGTATGTACACACTGATAAGCAGATGTTAGCCCAAAAG
TTCGGAATACCCAAGGTTCAGTTCACAAACCCTATGAAGAAGGAAGAAGG
ATGATCAAAATGTGGATGCTTCAGTGCTTTTTCAGAAGGGTGAACTAAAT
ACTCACTGGAGGAAATATATAGACAAAGTGTGGAGTAGAAATTGAAAGAA
AAGACATCCCAGAGATTTGCCCCACCTGTGGATCCATCCCCTATACCGCC
ATCACACCCGTTCGCTATTGTGGACTGTTGCGATATAGCTCGCTCATAAC
ATCCTGACATGGCCCGTCTCCTGAAAACT
CAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCAGCTCCTCCTGCACTGTGCCTTCC
TGGATGCTGCCATGCTCCCACCTTGATGATAATGGGATAATGGACTAAAC
CCCCTGAACCTGTAAGTCAGCCCCAATTAAATGTTGTTCTTATAGGAGTT
GCTTTGGTCATGGTATCTGTTCACAGCAGTAAAACTGAGACACATGGGAG
TTTTAATTGAGGGATCACCTTGATCAGATTGGCTTGTAGCCTAGTTTGTG
AGGGGCTATCTTGATGTATTTTTTTTTTGTCTATTTTGGGCGTTACCATC
CCTTAAGCATGTTGCCCTAGACTATATAAGACAGCTAGTCGTTGCACAGC
GTACATAACCTACCACTGAGCCTGTCAGCACGGTGCGTCCCTTCATGATT
TTCTGCTTCATTTCCCTTGACTGTCTGCCCTGTCTTTCTTTATTCTTAAA
CTGTGACTTGCTTATTATAATCTACACTTTATTCCCTTTTTCTCCTCTAT
TTTATTCATCTTTATCTTTTTATTCCTTTCTCTTCTTCTATTTTTCTACT
GTTTGTTTTATTACTTATTTTTCCTTTCTTAATCTCTTATTCTTTGTTTC
TCACTCCTCCTCTTTATATTAATTTTTTTTTTCTCTCCCTCTGCTTTTTT
CTCTTATACTCTCCTTTCTTCTCATTCTACCCTCCTTTCTACTTTTTCAT
ACACTTCCCTTATTAATCCCCCACTTTTCATTCCCTTACTTTTCTCCTTT
TCCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_g10.b1 MSMg01no473_g10.b1 CHROMAT_FILE:
MSMg01no473_g10.b1 PHD_FILE: MSMg01no473_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:28 2005
         (249 letters)



>mm_chr10_114533972_114534620
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgatatataattatttgtaaatattttatttgaatataattacatataatcattagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgatatataattatttgtaaatattttatttgaatataattacatataatcattagct 260

                                                                       
Query: 61  taaaaccaaaacaggaatgatagatggggcctcttccgcagaagaaagcagagtaattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaaccaaaacaggaatgatagatggggcctcttccgcagaagaaagcagagtaattta 320

                                                                       
Query: 121 cattcacagtcattaagcggaaaaagacagcctgagtgtcgacaatctgaactctgaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattcacagtcattaagcggaaaaagacagcctgagtgtcgacaatctgaactctgaagg 380

                                                                       
Query: 181 gctgtggaacacacctagggagggctcagggaaaaacagatagggtgcacaatgctgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgtggaacacacctagggagggctcagggaaaaacagatagggtgcacaatgctgcca 440

                    
Query: 241 tcttcagat 249
           |||||||||
Sbjct: 441 tcttcagat 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)