BAC Information

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BAC

Clone NameMSMg01-473J06
Chromosome10 (Build37)
Map Location 107,767,782 - 107,768,231
singlet/doubletsinglet
Overlap genenone
Upstream geneLin7a, Myf5, Myf6, Ptprq, EG628870, Ppp1r12a
Downstream genePawr, EG667814, Syt1, EG368203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473J06.T7 (MSMg01no473_j06.b1)MSMg01-473J06.TJ (MSMg01no473_j06.g1)
ACCAG555844AG555845
length764768
length of high quality
(start - end)
250 (78 - 327)460 (78 - 537)
definitionCHROMAT_FILE: MSMg01no473_j06.b1 PHD_FILE: MSMg01no473_j06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:42 2005CHROMAT_FILE: MSMg01no473_j06.g1 PHD_FILE: MSMg01no473_j06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAACACCGCGG
AATTCTGAGATAGAGTTACGTGCAGAAGATCTGCCCAGGAAGATGTGAGT
AGATGGGCGAATGGTATCTAAGCACAGGCAACAGCCATGTGACAAAATGT
AGATTAAAATAAACATGTTATCTAAGTTGTGATCTAGTCAGAGAAGAGTC
TTAGCTATATGGCCAAGGTATTTGTAAATACATTTTGAGTCCGAGTCTTA
TTTCTGGGATCATGGGGCTGGGAGGAAAAACCAGGACCTAACGACAAGGG
AAACACTTGAAGCCACACTATAGTTTGTTTTCTCCAACATGACTTGTTTT
TTGGTTTGCTTGTTTGTTTTGTTACTGCTTGCGTTTGGGTTTTGCTTGGT
TTTGTTTTTGTTGGGTTTGTCTGCTTAAATGCCGGGGACATGTTTTCTAC
CACAGACATGTTTTCAGTCTTAAACACATGTCATCAATATTTCCTCTGTA
CTTTTTAGTCAGTAGATGTGACGATTCTTTAATGAAATCTCATCACAAGC
TACTGTCCTCCCTGTCCTAGTTATCAGGGCCTCTTCTGACACTTCAGCTT
TCCTCTTATGAGGAGACTTTGATGGCCCATCTGGCATCTGCTGCTTCTGG
TGGTTGCCTTGCGTTTGAATGCTTTTCTGTACTTTAGCCCTTTTACGTGC
CGGCTTGTTTGCTGCGTCATCCCTAAAAATTCCCTCCATTCCTAACCTGG
TTTCCCTCCTTTCG
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCGAATTCAGAGAATTTAAACATACATTAAAG
ATCCCTGTGGTAATTTACATATGCGTATCCAGGCTGAGCCTGTCCTCTTT
CCAGCGCTGTGTTTAATCCTTCCAAGTGAGCATTCTCAGGTAACTAACTC
AGGAATGTGAACCTATATAGCCAGGCTCCAGCTTGCCTCAGAAAACAAGC
CCGAGAAACCAACTCAGCACACCTAAGTTGGTACCAGCTAGGCTCGCAGT
CAGCCTGGTTTTTTTGTTTTGTTTTTTGTTTTTTTTTTTTTAATCCTTCT
TGGGTGGGGTGCGGGGAGAGGCCTTTTACCAAGCAACTTTCTAAGCCTTC
TCCAAGTTAATCGTATGTCCAGCCCAACAGGCAGACCAAAGACCAGAATT
GCTTCTGAGAAATGCAAGACTGTGAGTCACTATAGCCTGTGCCCATTGCT
GTGGTGTGTTACCTGCTGCCTCCTTACCTACATTGGGTCACCTGAGCAAA
ACGACGATGACTCGTTCGGTCAGCCTATGTGCCTCCGGACTCTTTACTGA
TTGGGAAATCGGTTTCATAACCCCTGAAAAAGATGCTCTCTGAAATTGCC
AGAAGTGACAAAAAATTCCCTTTTTTTTTGATTCCTCTGAGTATTTACTG
ATTTTTGTCGCGCCACTAAAAAATGTAAAGCCAAAAATCTTCTATTTTTC
GTTTTTGGTGGGGGGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_j06.g1 MSMg01no473_j06.g1 CHROMAT_FILE:
MSMg01no473_j06.g1 PHD_FILE: MSMg01no473_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:43 2005
         (460 letters)



>mm_chr10_107767582_107768441
          Length = 860

 Score =  835 bits (432), Expect = 0.0
 Identities = 448/458 (97%), Gaps = 8/458 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaatttaaacatacattaaagatccctgtggtaatttacatatgcgtatccaggctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagaatttaaacatacattaaagatccctgtggtaatttacatatgcgtatccaggctga 260

                                                                       
Query: 61  gcctgtcctctttccagcgctgtgtttaatccttccaagtgagcattctcaggtaactaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctgtcctctttccagcgctgtgtttaatccttccaagtgagcattctcaggtaactaa 320

                                                                       
Query: 121 ctcaggaatgtgaacctatatagccaggctccagcttgcctcagaaaacaagcccgagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaggaatgtgaacctatatagccaggctccagcttgcctcagaaaacaagcccgagaa 380

                                                                       
Query: 181 accaactcagcacacctaagttggtaccagctaggctcgcagtcagcctggtttttttgt 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accaacacagcacacctaagttggtaccagctaggctcgcagtcagcctggtttttttgt 440

                                                                       
Query: 241 tttgttttttgtttttttttttttaatccttcttgggtggggtgcggggagaggcctttt 300
           ||||||||||        ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgtttttt--------ttttttaatccttcttgggtggggtgcggggagaggcctttt 492

                                                                       
Query: 301 accaagcaactttctaagccttctccaagttaatcgtatgtccagcccaacaggcagacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 accaagcaactttctaagccttctccaagttaatcgtatgtccagcccaacaggcagacc 552

                                                                       
Query: 361 aaagaccagaattgcttctgagaaatgcaagactgtgagtcactatagcctgtgcccatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aaagaccagaattgcttctgagaaatgcaagactgtgagtcactatagcctgtgcccatt 612

                                                 
Query: 421 gctgtggtgtgttacctgctgcctccttacctacattg 458
           ||||||| ||||||||||||||||||||||||||||||
Sbjct: 613 gctgtggcgtgttacctgctgcctccttacctacattg 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)