BAC Information

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BAC

Clone NameMSMg01-473K23
Chromosome10 (Build37)
Map Location 124,878,453 - 124,878,920
singlet/doubletsinglet
Overlap genenone
Upstream gene4930503E24Rik, LOC671416, Slc16a7, LOC100042987, EG668313
Downstream geneLOC100042992, LOC668317, LOC100042994, Lrig3, LOC100043547
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473K23.T7 (MSMg01no473_k23.b1)MSMg01-473K23.TJ (MSMg01no473_k23.g1)
ACCAG555926AG555927
length7921,244
length of high quality
(start - end)		472 (51 - 522)---
definitionCHROMAT_FILE: MSMg01no473_k23.b1 PHD_FILE: MSMg01no473_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:52 2005CHROMAT_FILE: MSMg01no473_k23.g1 PHD_FILE: MSMg01no473_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCACCATTCTCTCAATAGCTAGTTTAGGAAAAATGTCTGGG
CTCTAGAATTTATATTTTGGGGTTTAGCATTCCACATATTTAAGCTTTCC
TTTATATCTATTTTGTCTATATTTTCTATAACCACTATAACATATTTATT
GTACTTATTTTAGAGATATGATAACTCTGAACGTCTGAGTTACCTGTCAG
TTATCCTCTGTTGACTGACTTAACAACTGCACTGGGTCTCTGTTTGTGTA
CATGGGACTTGTAATTTTATGCCAGATGTGGTGATTAAAATTATCATTAG
GATGAAAATACATAGTATTTTCTTTTATTAATTCATTTTTTAATTAGATA
CCTTATGTAGTAGTTGATCCTGAATTTCATTTCTAATCTCTCCAATTTAA
AAATTCTTTGAGCTGATGAGCAGTTCACACTATGGTCCTTAGGAGAACTT
TCTGGGCTAAGCATTGGGAGAATAAGGAGCTCCAAGCTCAGCTTGTGGTA
TCCAACATCAACTATTGCCCCTCCCCAGCACTTAGTAAAGACAAATANAA
ANCCACCAGTGGATGGGCTGAGGGAAGAAATTAACCTAAATGGGGGGGTC
CTGGGGTTTTCTATCTCTCCATTCAGGGTAAAGGGGATTTTCTTGTTCTT
AAACAAAAATGTGCCCCTTCTATCAGCAAAGACAAACTCTGAATCCCTTT
GGCCGGTTTTGTGGACAGATATCCCCCGTGAAAAAAAAAACC

ATCACACATAGTAATAAGCAAATTAAGTATGGCAATCCGGGCCTCTCCAC
TCATGATCGCGTACCTCATGGTTGTGGTGCCTGTAGGCATAGTTAAGCCT
CGGGCGGTGGAAGGACTAGCTGCGTGACGCGGCTCAAGTAAACTATATTG
CAAACACAAGAAAAGAGAGAAAACACAAGGCTCACAGTAGTCGCATCGCA
GTGCCCCCGCTCACTTGTTCTATTCAGATCTCCAGCGAGCGCCATATTTG
GGATCCTTGTGCTGGTCGCACGGGGCACTCTAACAGCAATTGCGTATTCC
TCCGCACTTACATTAGTTAGGAATCAGTAATCGGATAGAGAAACTAGGAC
CTCACACAACACAACGAGAGCAAACAACACATTAATGACAGCAATTACAT
AATATCTGGAATAATACACATAAGACAAGCCCACAAAGGACGATGGAGCA
AGCAAACAGACAAACAAAGAACAAGAAGATAATAGAAAGGGTGAGAGAGG
CCAGCGGCGAGTGAGACTGGCGTAGTGCGAGTGAGTCTGTTAACACTCTA
TCATAGACTATTACTAACTGAAAGAAAGAAGCACCAGAGCAGAGAAGACT
CAAATAATCACTACGAGCTGCTCGCTGCTAAGCGCCGTTAGAAGCGAACC
GCAAGAGAGTTAAGAACGCAAGCGTACCGTTGCGATTGCGAGGCGTGCCG
CTTGGCGCACTATTATAATTACACCTGCACGTGTAAGATAATGACACAGC
TAACACGATCGTTGTGAGTAGGAGAGGACACAAGAATGCGAACACCGTTG
CTAATAACACAGCATGNGAAGAACGTAATGCCACCACGCAACGCAAAGCG
ATAACCGTACATCGACGCGCCCCATATGCCTCATCTCCACGTATTAAGCA
CACAATGTACGGCAGATCACTTCTATCGGCTCTGACGACAGAGCGATGAG
CGTCGCGATTGTATGACCGCCGACGCTGATGAGCAGAAGACCGAGAGCGG
CAGCTCAGCGCGAGCGCGACGACGCGTCTATTGTGCGCTGAGTATGAAGA
GTTCGACCGACATAGCAGAGTGCGCGCGCGATGACTGATTACTTGTACTT
ACTCGGTGAACCACGCACTTAACTATACATGAAGCGAATACTGTGGATAA
TAAAGATCACACGAATGCCATNCGCACATATACCTTATATACGACTAGTA
CTAATGGAGTTGCAGATACGCAGAACGACATGTATGGAGGCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_k23.b1 MSMg01no473_k23.b1 CHROMAT_FILE:
MSMg01no473_k23.b1 PHD_FILE: MSMg01no473_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:52 2005
         (472 letters)



>mm_chr10_124878249_124879120
          Length = 872

 Score =  882 bits (456), Expect = 0.0
 Identities = 465/468 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaccattctctcaatagctagtttaggaaaaatgtctgggctctagaatttata 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaccattctctaaatagctagtttaggaaaaatgtctgggctctagaatttata 264

                                                                       
Query: 65  ttttggggtttagcattccacatatttaagctttcctttatatctattttgtctatattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttggggtttagcattccacatatttaagctttcctttatatctattttgtctatattt 324

                                                                       
Query: 125 tctataaccactataacatatttattgtacttattttagagatatgataactctgaacgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctataaccactataacatatttattgtacttattttagagatatgataactctgaacgt 384

                                                                       
Query: 185 ctgagttacctgtcagttatcctctgttgactgacttaacaactgcactgggtctctgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgagttacctgtcagttatcctctgttgactgacttaacaactgcactgggtctctgtt 444

                                                                       
Query: 245 tgtgtacatgggacttgtaattttatgccagatgtggtgattaaaattatcattaggatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgtacatgggacttgtaattttatgccagatgtggtgattaaaattatcattaggatg 504

                                                                       
Query: 305 aaaatacatagtattttcttttattaattcattttttaattagataccttatgtagtagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaatacatagtattttcttttattaattcattttttaattagataccttatgtagtagt 564

                                                                       
Query: 365 tgatcctgaatttcatttctaatctctccaatttaaaaattctttgagctgatgagcagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgatcctgaatttcatttctaatctctccaatttaaaaattctttgagctgatgagcagt 624

                                                           
Query: 425 tcacactatggtccttaggagaactttctgggctaagcattgggagaa 472
           |||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 625 tcacactatggtccttagaagaactttctggcctaagcattgggagaa 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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