BAC Information

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BAC

Clone NameMSMg01-473K24
Chromosome10 (Build37)
Map Location 107,920,207 - 107,920,420
singlet/doubletsinglet
Overlap genenone
Upstream geneMyf5, Myf6, Ptprq, EG628870, Ppp1r12a, Pawr, EG667814
Downstream geneSyt1, EG368203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473K24.T7 (MSMg01no473_k24.b1)MSMg01-473K24.TJ (MSMg01no473_k24.g1)
ACCAG555928AG555929
length1,221797
length of high quality
(start - end)
---215 (82 - 296)
definitionCHROMAT_FILE: MSMg01no473_k24.b1 PHD_FILE: MSMg01no473_k24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:52 2005CHROMAT_FILE: MSMg01no473_k24.g1 PHD_FILE: MSMg01no473_k24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGAGTGGTTCGGGCTTTGCGATGTGGACATGGGCAGAGCCACTATCCTT
CTCCTCTCTAGGCTCGTGTTATAATTATCTGTAGTGTAGCACTCGAGGAT
GAGGACGGGGAGAGTAGGGCATCCACTGCCCGCCTCGCGTGACTTGTCGT
GAGTCGCGGTGTGGCTGATAATATGTGAATTCATCTATAATTTCTGCGCT
TCTGCTGCCCCGCGGAGCCTCTGCTGCCGGCTGCGGTACTCCCGTCCGGA
TGAGCACATGCACGAGTGTGTTCCATCTGTTACGTTCGACCTTGTCTTTC
TCCTATTCTCCCCTTGTATATCAGCTTCTTCTCTTCCATATCTTTCTCTG
GTGGTTCGACCGCGGCTACGACGAATGTGCGGTAAGTATTTGCGCACAGA
CGTGAGAGCTATGAAGATATGTGAACATAGCGTGTCGAACGATGACAGAA
CATAGACGAGTGCGCCGATATACAGTGAAATGCAGGGAGATAAAGCTACA
GATGTGAGAGAGGTATAGTGACACTACCACCAATTAGTAGAGCTCGCCGT
AGCTACCATCGCACGTGGCACTCATATACATACCTAGCGCTCTCTCTTCA
TCTTCGTCATCCCATACATAGTTTCGCGTTATGATGGCAACAAGGCACTT
GTGGAGAAGCCGGGTACTGTGCGTTTATCCGACTCGAGCCGTCACGGCCG
CCTATGTGCGCACGTCTTCGCTAGTCTTCGTCCATTACCGTTCGCCAGCC
ACGAGACACTCACGAGTAGATAGTGATAGGACTCGCGCGTCGAGGGTAGG
AATAGAGATCAGTCCGCGTATTACTGTACATATCGACCTCGCTATAGATA
ATTGACTCGATGGTAACTGGGCAGAACAGTGCCTTGTTGGCGTGAACAGT
CCTACACCACCCTTCGTCTGGCCATATCATGCATGTGTGTCCTCGTGTCT
CCCAGCAGCGATGTTACCAACTGAGTATAAGGAGGTAGGTGAGCGCAAAT
AGATCCTAAGACACGAACGCGTGACTCGCGAAGTGCTATTCGACATAGAA
CGACTAGTCATCCATATCCTCGCACGATCGACACCGACACACNGANGAGC
CATGTTACCATATCAGATGATGTCCTNACACGCNGCCACTAGAGCTACAC
AGATACCGGCCGCGACACAATCTGTTCTGGAATGTAGGAGTGAGGGAGCT
GAGGTGTGNAGAGTCCGGTGN
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAGTGGCTTTTGAAAG
ACAGATTAGCGTTTATTGAAAAGAGAGCGCTCTTCCGGGGTAGCCCATGG
TTACCTCCTGCCTTTCCAATATGAGGGCCTGACATCTTGAGTTGACCAAC
CTCTTGGGCCATGCATTACTAAGACCCCAAAACAGAGTGCCAATTTACTG
AGGATGGTGAAAAGGAAAACGGAAGGGTGGGGTGGGGGACTTGAATANCA
TCCTGGATACTTAGCCCAACCTGGGACCTTTTTTTTTTTTTTTCAGCCTG
TATTAGCTGTCGGCGTTCACTTTTTACTCCGCACATCTGGTGGTTGGTTT
GCGCCCGATCAGGGCCGCGGCCCTTCGCCGGGTCTTTACGCTCGCCGTGC
ATTTCCTGCTTTCGTGCGGGCTCCTTTCGCACCCTGTCTGTTTTCTGTGT
TCCCTCTTCGGGTGTCTCTGTCTGGTCTTTTTCCGTCTCTCTTTGCCTAC
TGCTTTTTCCTTTCTTATTCCTTCTCTTGGTCCCCTTTATCTTCTTTTTT
TCTCTTCTCCCCTTCTTCCTTCACTCCTCCTCTCCACCCCTCGTTTTCCT
TCTTCTTTTCTCCCCCTTCCCCCCCCCCATTCTTTCATGCCCTTCCCCTA
ACTCTTTCTCCTCTTACTCTCCTTCTCCCTTTCTCTTTCTTTTACCTCCT
CTGCCTCTTATTCTCTCCCTTTCTCCCCTTCTTTCTCNTATCCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_k24.g1 MSMg01no473_k24.g1 CHROMAT_FILE:
MSMg01no473_k24.g1 PHD_FILE: MSMg01no473_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:52 2005
         (215 letters)



>mm_chr10_107920007_107920621
          Length = 615

 Score =  391 bits (202), Expect = e-113
 Identities = 211/214 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgagtggcttttgaaagacagattagcgtttattgaaaagagagcgctcttccggggt 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 414 actgagtggcttttgaaaggcagattagcgtttattgaaaagagagcgctcttccggagt 355

                                                                       
Query: 61  agcccatggttacctcctgcctttccaatatgagggcctgacatcttgagttgaccaacc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 354 agcccatggttacctcctgcctttccaatgtgagggcctgacatcttgagttgaccaacc 295

                                                                       
Query: 121 tcttgggccatgcattactaagaccccaaaacagagtgccaatttactgaggatggtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tcttgggccatgcattactaagaccccaaaacagagtgccaatttactgaggatggtgaa 235

                                             
Query: 181 aaggaaaacggaagggtggggtgggggacttgaa 214
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 aaggaaaacggaagggtggggtgggggacttgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)