Query= MSMg01no473_n16.b1 MSMg01no473_n16.b1 CHROMAT_FILE:
MSMg01no473_n16.b1 PHD_FILE: MSMg01no473_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:06 2005
(561 letters)
>mm_chr10_121680146_121681112
Length = 967
Score = 944 bits (488), Expect = 0.0
Identities = 543/564 (96%), Gaps = 8/564 (1%)
Strand = Plus / Minus
Query: 5 gaattcttagggtatccctattaaatatgtatatacatatacacagaaatattgtgacat 64
||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 767 gaattcttagggtattcttattaaatatgtatacacatatacacagaaatattgtaacat 708
Query: 65 cttagaaatattttgtttttaaatgattaacagcctgtttcctaactctctgataaccac 124
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 707 cttagaaatattttgtttttaaatggttaacagcctgtttcctaactctctgataaccac 648
Query: 125 taactctgtttcaatgaattgaataagtagtcgttggtcttcagtatttgttgctatata 184
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 taactctgtttcaatggattgaataagtagtcgttggtcttcagtatttgttgctatata 588
Query: 185 atattttataacttgtataat-ggtatttttaaacaagt-----gcaatcttgtacattt 238
|||||||||||||| | |||| ||||||||||||||||| ||||||||||||||||
Sbjct: 587 atattttataacttatttaatgggtatttttaaacaagtgcaaggcaatcttgtacattt 528
Query: 239 cttttatgaacatatttatccttggcaatggtatgtacattgtttcctaaacaggtttgt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cttttatgaacatatttatccttggcaatggtatgtacattgtttcctaaacaggtttgt 468
Query: 299 gctagaaaacattcccctgattaga-tttttttcatttaatttacagaatttgaatatga 357
||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 467 gctagaaaacactcccctggttagattttttttcatttaatttacagaatttgaatatga 408
Query: 358 atttgcatttgggctgacatctagtttattagttttataatgcgattatacattttctta 417
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 407 atttgcgtttgggctgacatctagtttattagttttataatgcaattatacattttctta 348
Query: 418 ttcaattaccccgcatccctccccagatttcttgacttcttgctcagttttctttcccct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ttcaattaccccgcatccctccccagatttcttgacttcttgctcagttttctttcccct 288
Query: 478 aaatggtatctcactcgattctagtgatttcctctctgttacctgcagtttacataactt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aaatggtatctcactcgattctagtgatttcctctctgttacctgcagtttacataactt 228
Query: 538 gaatcttttcttacttggaggggt 561
||||||| ||||| ||||||||||
Sbjct: 227 gaatcttctctta-ttggaggggt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 967
Length adjustment: 10
Effective length of query: 551
Effective length of database: 957
Effective search space: 527307
Effective search space used: 527307
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_n16.g1 MSMg01no473_n16.g1 CHROMAT_FILE:
MSMg01no473_n16.g1 PHD_FILE: MSMg01no473_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:06 2005
(430 letters)
>mm_chr10_121502245_121503074
Length = 830
Score = 634 bits (328), Expect = 0.0
Identities = 402/427 (94%)
Strand = Plus / Plus
Query: 1 aaaggacttttctacagtgggactggccaattgaaaccttanagacaaggttagactgat 60
||||||||||||||||||||||||| |||| || |||||| ||||||||||||||||||
Sbjct: 201 aaaggacttttctacagtgggactgaccaactgtcaccttaaagacaaggttagactgat 260
Query: 61 cggcagagggataacttatctagataagtggtgcatccatctgccttcaccttgcaactg 120
| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 261 cagcagagggataacttatctagataagcggtgcctccatctgccttcaccttgcaactg 320
Query: 121 accccaacaccaaaggaactctgagcgcttgacgctgccatttgtgatcttggaccacca 180
||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct: 321 acctcaacaccaaaggaaatctgagcgcttgacactgctgtttgtgatcttggaccacca 380
Query: 181 tgttcagtgtggataagacaccttcaactacactacctgatccttcatccatgaagacaa 240
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct: 381 tgttcagtgtggataagacactttcaactatactacctgatccttcatccacgaagacaa 440
Query: 241 caacttcagagtcttcaccaacaggctgtcctgtgtgcactatgacttggacattagaaa 300
||||||||||| | |||||||||||||||||||||||||| |||| |||||||| |||||
Sbjct: 441 caacttcagagccctcaccaacaggctgtcctgtgtgcacaatgatttggacatcagaaa 500
Query: 301 gctgtgctacgacagagagccaacagctgagccaaggcaatccaagtagcccttctccat 360
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 gctgtgctaccacagagagccaacagctgagccaaggcaatccaagaagcccttctccat 560
Query: 361 ggcaacctagtacccagcctgggacagtgtactgtgagcattcaaggagaggtcaaaaga 420
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 561 ggcaacctagtacccagcctgggacagtgtactgtgagcattcaagtagaggccaaaaga 620
Query: 421 ggaaacg 427
|||||||
Sbjct: 621 ggaaacg 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
