BAC Information

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BAC

Clone NameMSMg01-474D06
Chromosome10 (Build37)
Map Location 23,911,760 - 23,911,998
singlet/doubletsinglet
Overlap genenone
Upstream geneEya4, Rps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7
Downstream geneMoxd1, LOC628537, Ctgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399, Akap7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474D06.T7 (MSMg01no474_d06.b1)MSMg01-474D06.TJ (MSMg01no474_d06.g1)
ACCAG556320AG556321
length756708
length of high quality
(start - end)
239 (80 - 318)117 (153 - 269)
definitionCHROMAT_FILE: MSMg01no474_d06.b1 PHD_FILE: MSMg01no474_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:34 2005CHROMAT_FILE: MSMg01no474_d06.g1 PHD_FILE: MSMg01no474_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTAATGCGGCGG
AATTCACTTTGGATTACTGAAAAAGCTTCAGCAGTTGGCCAGACTCTAAG
GACCACTCTCTCCTGTTGATCTTTTTTCCTTCTGAAAGTGACAGAAATTA
ATCTTTTAGAAATCAAGTTTTCTGGAAATAATCAGTTTTGATAGCCTATC
TAAACCATCACCAAGTGGAGTTGTTCTGATGGTTGTGACTGGGATTCAGG
GTATCTTGGATACCAAGGTCCTGTGTTTGGAAGACATTCACAGAAGGCTG
CTGCTTCCAGTAGAGGGCATATATTCANATTGAAGGGAGGGAGTAAGGGG
AATTTGCAACATAACAGCCTCAAACAAATACATTGAGTATCCTCTGTACA
AAATGTATCACAGAATGTATATATTTAGCCTTACCCCACCCCGCAACAGT
TGTTCTTGTTTGTTATTTTGCCTTTAATGAAAAGGGAGTGTAAAAGGAAA
CCTTGCTGCAGGCGGTAATCTACCCTTTGAAATCCCCAGCATTTAAGGAT
AGGAAGGCAGGAGGATTTTCTTCGGGTGGTAAATCCTGCTGCCTTTTTTA
TATTTTTGGTGTACATCATAATATTTTACTTACCTCGTTTTTGTTTTTCT
ATTATATACCTAATTTTTACTTTATTCTTTTTTACTACTTTTATAAATCT
TTTCAATTTTTCAACTTTCTTCTCTCTTTATAAATTATTTATTCTCATTC
TTCTTG
CCGGGCCCTCCCAGTGGCTCGTAGGGAAATGAAGTGGGTAGGGCGGGGGG
NCGCCTGGCCTTCAAAAAAGGGGNNGAACNANAGAAGGATTCCCGAAAAA
GGGAGNNGAGAAAGACGGGGAAGGAGAAAACAGGAGCAAACAAACTTACA
AACAACCACACCAAAATTCCCCAAAGAANCAAAATAGATAAAAACCTTAC
AATCAATCTTTTTTCAATGTATGCTAATATTAACACAATAAAACATATTG
ACTAAGTTTATGAAATCTTTATTATTGTCATAAATATCTATATTCCTTAA
TCTATGAATATTTTATATTGGAAGGTCATTTATTCATAAAAAAAATTTTT
TTTTCTGGCCAATCCGAAAATTAAAATAAATAAATCCCAAAATTTTTTAA
AAAAGGGAAAAAAGGCTGGAGAAAACCTTTCCTAATTTTTGGGAAAAGGG
GGCCCACACAACATAAAGGGCCCGAAAGAGCGGGGAAATCCCACCGGGGA
ACTCAAGGGGGGGGCCGGGGGGGCACAAAAAAAAGGGGGGGGGGCGAAAA
AATCCCTCAGGGAAAAGAAAAAAAGGGGTTTGTGGGGGGGGGCGACCCAT
AAGTAGAAATATCACAATATAAACCAATGGAAGCGTACTCTCTCATAGAG
ACAAAGTGTCGGCATATTAAAACGAAATACTGTCCATAATAAACAAAACG
TCACCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_d06.b1 MSMg01no474_d06.b1 CHROMAT_FILE:
MSMg01no474_d06.b1 PHD_FILE: MSMg01no474_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:34 2005
         (239 letters)



>mm_chr10_23911560_23912198
          Length = 639

 Score =  424 bits (219), Expect = e-123
 Identities = 234/239 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagttggccagactctaaggaccactctctcctgttgatcttttttccttctgaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagttggccagactctaaggaccactctctcctgttgatcttttttccttctgaaagt 260

                                                                       
Query: 61  gacagaaattaatcttttagaaatcaagttttctggaaataatcagttttgatagcctat 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacagaaattaattttttagaaatcaagttttctggaaataatcagttttgatagcctat 320

                                                                       
Query: 121 ctaaaccatcaccaagtggagttgttctgatggttgtgactgggattcagggtatcttgg 180
           |||| | ||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 321 ctaagctatcaccaagtggagttgttgtggtggttgtgactgggattcagggtatcttgg 380

                                                                      
Query: 181 ataccaaggtcctgtgtttggaagacattcacagaaggctgctgcttccagtagagggc 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataccaaggtcctgtgtttggaagacattcacagaaggctgctgcttccagtagagggc 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)