BAC Information

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BAC

Clone NameMSMg01-474G23
Chromosome10 (Build37)
Map Location 39,073,773 - 39,074,049
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964
Downstream geneFyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474G23.T7 (MSMg01no474_g23.b1)MSMg01-474G23.TJ (MSMg01no474_g23.g1)
ACCAG556498AG556499
length741610
length of high quality
(start - end)
271 (53 - 323)294 (79 - 372)
definitionCHROMAT_FILE: MSMg01no474_g23.b1 PHD_FILE: MSMg01no474_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:53 2005CHROMAT_FILE: MSMg01no474_g23.g1 PHD_FILE: MSMg01no474_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTATACTTTGCACCCCCACACACAGAGTGCTTAGCAC
AGTGTTTTGCATATATTAGGCAATAAACAAATATTTCCTTAATTAACAAT
TTTGAAGGGGGCTGGGGACACAGCCCAGTTGGTAGAGAGTTCTCCTAGGA
TGCACAAAGCCCTGAACTGAGCTTAATCTGGGTTCCAGGTAAAATGGACA
CTGTAGCACACACACACACACACACACACACACACACACACACACACACA
CACACACATCGGGATCCCAGCTCNCTGTTTTTTTTTTTTAGCAAGGNGGG
GGGTATCTTCCAGCTAACATAGTGGAAATTTTAGGGGCCACGTGGGGGCT
ACCCCCTGAACCCTGGAATTTTAAAAAAAAAAACCAGGTAAGGTAAGGGA
TCCCCCCCAAAAAANNAGGGGGGGAGGGAATATCCCCCTCCCACCCCTGG
GGAAACCCGCGAAATTTTCCCCCCCCCAAAAATTGAATTGTGGGGAGGGC
AAAAAAAAATGGGTCTCCTTCTTTCCTCGGGCTTGGTGCTCTCTAAAATT
TTTTGGGGGTGGGGGGTGGTGCCCCCCCCTCTCCTCCCGGTGGTGGTAAA
TTTATTGGTGGAGATAAATCCCTCTCTTTTTTTTTTTCTTTTTCTTGTTT
TATTTTGTTTATAATGTTGTTTTAGAATATTGTTTTGTGTC
NGGGGCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAGATTCCTGAACATCTAT
GTAAGTTGAAGCAAAAATGTGGTTTCTAGCATTTCTGAAAAGAAATGTTA
TTATTTTACCTGAAAATCCTATTCATTCTCATTTTCTTAGCCCATGGTAT
CTCCTTCCTTAGGTTTAGCTCAGCTTCAGGCAGGAGGGTGGTAGATGTCA
ATTTAGCAAGATATTCATTAAGACTGGGCAGCCCCAGGATGCTGCTCCAT
CTCAGGAGCAGGGCCTCCCGCCAGGATAGAACAAACTTCTAGGGGTACCT
CAGGGAGATAGGGACATCCTCACATGGGGCTTTNGGTTTTCNAAGCCACT
CTTGCCTTTTGAAGCAGAGGGAGAAGAAGATCAGAGAACAGAAGTTCTTT
CATAGTTCTTCTAAGCCTGCTTAGGACTTCACCCCTGCTAAAGCAAGAAT
GTGGTTATACAGTTAAGGGAGCTGTTTTAAGTTAAATTCAAAAAGGGCAG
GGTTACCCCTTTCAAAAAATTTAAAAACCATGGGCCAACCCCTTTAAGGC
CGCCAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_g23.g1 MSMg01no474_g23.g1 CHROMAT_FILE:
MSMg01no474_g23.g1 PHD_FILE: MSMg01no474_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:53 2005
         (294 letters)



>mm_chr10_39073573_39074264
          Length = 692

 Score =  487 bits (252), Expect = e-142
 Identities = 273/280 (97%), Gaps = 4/280 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcagattcctgaacatctatgtaagttgaagcaaaaatgtggtttctagcatttctga 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 477 tctcagattcctgaacatctatgtaagttgaagcaaaaatgt-gtttctagcatttctga 419

                                                                       
Query: 61  aaagaaatgttattattttacctgaaaatcctattcattctcattttcttagcccatggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aaagaaatgttattattttacctgaaaatcctattcattctcattttcttagcccatggt 359

                                                                       
Query: 121 atctccttccttaggtttagctcagcttcaggcaggagggtggtagatgtcaatttagca 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 358 atctccttccttaggtttagctcagcttcaggcaggagggtgggagatgtcaatttagca 299

                                                                       
Query: 181 agatattcattaagact-gggcagccccaggatgctgctccatctcaggagcagggcctc 239
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 298 agatattcattaaga-tggggcagccccaggatgctgctccatctcaggagcagggcct- 241

                                                   
Query: 240 ccgccaggatagaacaaacttctaggggtacctcagggag 279
           ||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 240 ccgccaggagagagcaaacttctaggggtacctcagggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 692
Length adjustment: 9
Effective length of query: 285
Effective length of database: 683
Effective search space:   194655
Effective search space used:   194655
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)