BAC Information

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BAC

Clone NameMSMg01-474L16
Chromosome10 (Build37)
Map Location 66,973,433 - 66,973,847
singlet/doubletsinglet
Overlap genenone
Upstream geneReep3, Jmjd1c, Nrbf2
Downstream geneEgr2, Gm237, LOC100040081, LOC100039618, Zfp365, Plekhk1, Arid5b, LOC100040136, 1700040L02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474L16.T7 (MSMg01no474_l16.b1)MSMg01-474L16.TJ (MSMg01no474_l16.g1)
ACCAG556722AG556723
length1,518726
length of high quality
(start - end)
---414 (78 - 491)
definitionCHROMAT_FILE: MSMg01no474_l16.b1 PHD_FILE: MSMg01no474_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:17 2005CHROMAT_FILE: MSMg01no474_l16.g1 PHD_FILE: MSMg01no474_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGGCGGCTGGCTGCCTNCCCCCAANCAAACCACCTACCCCACCTACCC
TCTCTCCTCACATGAGGCCGAGCTAGACCCTATCACTCGTTCCTCTCCAC
CACCAGCTCCACACACCGGCTCGCATGCGACGCGTGGGCGTGACACTATT
TCAATCAAGAAATCTATCTGAGCGACTGGTCCAAACAACGAGGCAACCCG
CTCGATAGTTCCCCAAGCAAAAGGAGAGTAGAGAGGCGACACGGCTGACC
ACTACTTGTTTTGTATCCCCCGATGTGAGCGGAGGGTGTGCGGTTGTGGT
TGTCATCGTCGTACGACTGCGCTAAAGTGTGAGGAAGGGTGTACGATCGC
GACATAGGGGAGAGGAGCGAGGTTGGTGGTAGGAAGGTGAGGAGTTGAGA
GTCACATGCAAGGTGTAAAGATCAAAGAAACAATACGAACACAGAAGATA
ATAGCAGAATGGAGACACGAGTGACGACACTCACAGGCGAATATGCAGGA
TGGATAGAGAGNCATCTAGAACGTACACGATAGGGAGAGAGAGACAGGAT
TAGTACGGCACGGAAGTCGTCGCATGGCGGTCGAAGATCGTGCTCCGTCA
CGATGCGACCGCGCGCAATAGACACGACGTACAGTACGTATGTAAACACA
AGACGACGCAAAACGTCTACATCAGAGATAGAGGGCTGGAGATACTGAAA
CTAGTGTCGTCCACATGAGAGTGACATCGGCTACATCACNGCAGCAGCGA
GNATCATCGACCTATATATCNTGGAGACAAGTCGCAGCAGCGCAGAGTAC
TAGCGNCGANGAGGCTAGTGATGAGTATAACGAGAGTGGCGAGTAATGTA
CACGCGAGGCAGAACGGTTAGAAGGATGCGNCGATANTCATCACCACATA
GCACGCGCGATCTACNGAGAACGCATTACGATGTCACAGCAGACGTTGAC
GACCGCGCTATGATCTGTGNGAGTAGCAGATGTCATGATCAGAGTTAACC
GAGTGCACGTGCGCGCANCTGTATGTATAATCGACATGCAAGGGTGACAA
NTATAGATGGCGATGTACTACGCTCGTAAGTAGAGTGACGAAGACGAGAN
TAGCGATGAGCTGCGATGATACGAGNGATGCGCGGCAACATATACCCAGC
AGTACGCNCAGACCAGNAGACAGGCACTAGAGCGAGTCGGNGCGGCAGCG
ATGCTGAGTGAACGTATATAATGCGGAGTCGCAGTCAGAGACTAGCGTGA
ANGATGACAACACACGCACCTGCTGACGAGCGCATANGCGAGCGCGNGGA
CGCACGTACGCTGCTGCAGCTCGTATGTCACGNAGTATCAATAGATATGC
CATGATATGGATGCGAGCTCGAAGAACGCGCGCATGATGCGCTNGNATGC
GCGCGATAGACAGTCGCGTCACGNGTACTGTGTCTCGAACGACTCTATCN
AGGGTTACTAACGAGATGTATCCCGCGATAGGTATCGATGACGCGATCGA
GCTGAGATGGATGCACAG
NNCCCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCCACGAGGCGTGGTGACAGG
TGCCCTTAATTGCTGACCTATCTCTCCAGCCCAGACTCTATCTGTTTTGG
TGGATGGTGTTCAGTCCAGGCAGAAGAAGTGCTACAGGGATGGCCTGCCT
GCAAGAACCAATTAAGGCTGCCCTTCACTCTGAAGACAATCTTACTTCCA
GACTGTAGACCTGTGGGTAAGGGACAGGATTATCTATTTTAATGTTGCTG
ACCTCATTTTCTGAAAACTTAGTTCTTCCGGAACTTCAACGTGTTTAAAC
AAATAAAAGTGACAGGCAGGTTTTCCTGGAAGTTTCCCCCATCCTTATGT
CATGGACGTTATTATTTTTTTTTCTACATGGAAACATCTTGAAACTGGAA
AGACATGGGATATTATTATGTGAGACCCATTCATCGGGGTTGGGTTCAAG
TCCTTTATTCCAGATGTGGGAGAATCTGGACTTGGCGAGCTCTGCATTTC
CTTTGGATCTCACTGAACATTTGAGGCTGCATTGGGCGATGCAACCCCTG
GCTCCGTACCCATAAAAACGTTTTCTTTTCCTTGAAACCAAAGCTTTGTT
TTTTTTTTTTTTCTCGCCCATTCCTCACATTTCCTCCCCTCCTTTACATT
TTAGCTTCTCTCTTGTGTCTCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_l16.g1 MSMg01no474_l16.g1 CHROMAT_FILE:
MSMg01no474_l16.g1 PHD_FILE: MSMg01no474_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:17 2005
         (414 letters)



>mm_chr10_66973233_66974047
          Length = 815

 Score =  756 bits (391), Expect = 0.0
 Identities = 409/415 (98%), Gaps = 1/415 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggccacgaggcgtggtgacaggtgcccttaattgctgacctatctctccagcccagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggccacgaggcgtggtgacaggtgcccttaattgctgacctatctctccagcccagact 260

                                                                       
Query: 61  ctatctgttttggtggatggtgttcagtccaggcagaagaagtgctacagggatggcctg 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ctatctgttttggtggatggtgttcagtccaggcagaggaagtgctacagggatggcctg 320

                                                                       
Query: 121 cctgcaagaaccaattaaggctgcccttcactctgaagacaatcttactt-ccagactgt 179
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 321 cctgcaagaaccaattaaggctgcccttcactctgaagacaatcttacttcccagactgg 380

                                                                       
Query: 180 agacctgtgggtaagggacaggattatctattttaatgttgctgacctcattttctgaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacctgtgggtaagggacaggattatctattttaatgttgctgacctcattttctgaaa 440

                                                                       
Query: 240 acttagttcttccggaacttcaacgtgtttaaacaaataaaagtgacaggcaggttttcc 299
           ||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actaagttcaaccggaacttcaacgtgtttaaacaaataaaagtgacaggcaggttttcc 500

                                                                       
Query: 300 tggaagtttcccccatccttatgtcatggacgttattatttttttttctacatggaaaca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggaagtttcccccatccttatgtcatggacgttattatttttttttctacatggaaaca 560

                                                                  
Query: 360 tcttgaaactggaaagacatgggatattattatgtgagacccattcatcggggtt 414
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttgaaactggaaagacatgggatattattatgtgagacccattcatcggggtt 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 815
Length adjustment: 9
Effective length of query: 405
Effective length of database: 806
Effective search space:   326430
Effective search space used:   326430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)