BAC Information

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BAC

Clone NameMSMg01-475B21
Chromosome10 (Build37)
Map Location 96,582,854 - 96,583,342
singlet/doubletsinglet
Overlap genenone
Upstream geneEG432491, LOC667380, Btg1, LOC628256, 4930556N09Rik
Downstream geneEG667407, Dcn, Lum, Kera, Epyc, 4921510H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475B21.T7 (MSMg01no475_b21.b1)MSMg01-475B21.TJ (MSMg01no475_b21.g1)
ACCAG557019AG557020
length794821
length of high quality
(start - end)
491 (70 - 560)38 (76 - 113)
definitionCHROMAT_FILE: MSMg01no475_b21.b1 PHD_FILE: MSMg01no475_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:47 2005CHROMAT_FILE: MSMg01no475_b21.g1 PHD_FILE: MSMg01no475_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATTCACTGTTCCTCATGTCTCAGCATCTTCCTTGATGGAGGTTGG
GAAACCTGTCTTATTTACACCCGCTGACCTGACCAGGATCTTCTCCAAGA
CGTAAAAGCAGGTCTTGGCCCTCATAGCCATGTTCCCTGATGAACCTTTC
CTGTCTGCACAAATGAGGATTTGGATTCATAATGCTTTAATTTAATGAAT
CAAGTTCATGCCATAACTCTTAAACTGACAAGAACATATTGTAAATAACA
AATATTTTAGAATATATACACTATGATATATTTATAATGTTAAGCTATTT
AATTCTTCTTTTAGATTTAAAGAATTTGGAAAAAAACTCCACTAATATTT
GAGGACACACTACACAGGTGCCTTTTGGGTCTGGGTTAGTTTACTCAGGA
TGTTATTTTTTAGTTCGATTCATGTGCCTGAAATTTTCATACTGCCCTTG
TTTTTAATGGCTGTGTAGTATTCCATTGTGTAAATGAATCATGTTTTATT
TATCTATTCTCTGTTTGAGAGAAGTCTGGCTTGTTTCCTGTTTCTGACTA
TTGGGAATAAAGCTGTTATGAACCGGCCCTTGTTGGGTGATGAAGAATTT
TTGGGGGGAAGAAGGGTGTTTTCACCCTCCTTCTACCACTCTTTATTCTC
CCTACCTTTCCTTATCCCATTATTTCTCCCCCTATTGTCCCTTTTTTTTT
CCCACCTTTTATCTCCCTTATTTTCTCACTATTTCAATCACCCC
CTTCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGGCGAGGAAGCAGGAGTGGGTGG
GTTGGGGAGCAGGTCGGGGAAGGGAATAGGGCCCTTTCGCTTTCCCTCCT
GCTCTGCCCCTTCCCCCCCTTGGGGTTGTTTTCTCTTCCCTCCCCCGCCC
CTTCCCCCTTTTTTCGCGCCTTTCCCCCTCCTTGCTTTCCTCTTTTTTTC
CCTTTCCTTTCCCCTTTGTCTCCCTTTCCCTTTCTTTTCTTTTTCTCTCT
TTCCCCCCCCCCTTTTTTTTTTCTCCCCCCTCCCCCGCCCTTTCTTTCCC
GTTTCCCCTTTTTTTTTTTTCCCTCCCTTCTCCTCCCCCTTCTTCTTTTT
TTTCGTTCTCCTCTCCTCTCTTCCCCCCCCCCTTTTTCCCCCCTCCTTTT
CCTCCTTTTTTCTTCCTCTTCCCTCCTTTTCTTCTTCTTCCTTTCTTTTT
TTCCCTTTTCCCTTTTTCCTCTCGCGCTTTTTTCTTCTCTTTTTCCTCCC
CCCCCTTTTTTCTTCTCCCCCTCTCTTTTTCCCCCCCCCTTTTCTCTCGT
TTTTCTCCTCCCTTTCCTTTTCCCCCTTTTTCCCCCTCTTTTCTCTCCTC
CCCTCCCTCCTCTCCTCCTTTCCCCTCCCTTTTTCCCCCCCCCCTCCTCC
TTCTTCTTTCTTCCCTTTTCTCTTCCCCCTTCCCCGCTCTCTTCCCCCCT
CCCCTTCTCTTTTTTTTTCCCCTCTTCTCGCTTTCCCTTCTCCCCTCTTC
GCCCCTTTCCCTCTCTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_b21.b1 MSMg01no475_b21.b1 CHROMAT_FILE:
MSMg01no475_b21.b1 PHD_FILE: MSMg01no475_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:47 2005
         (491 letters)



>mm_chr10_96582654_96583544
          Length = 891

 Score =  915 bits (473), Expect = 0.0
 Identities = 485/489 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtctcagcatcttccttgatggaggttgggaaacctgtcttatttacacccgctgacc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 atgtctcagcatcttccttgatggaggttgggaaacctgtcttatttatacccgctgacc 260

                                                                       
Query: 61  tgaccaggatcttctccaagacgtaaaagcaggtcttggccctcatagccatgttccctg 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaccaggatcttctccaagacataaaagcaggtcttggccctcatagccatgttccctg 320

                                                                       
Query: 121 atgaacctttcctgtctgcacaaatgaggatttggattcataatgctttaatttaatgaa 180
           ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaacctttcctgtatgcacaagtgaggatttggattcataatgctttaatttaatgaa 380

                                                                       
Query: 181 tcaagttcatgccataactcttaaactgacaagaacatattgtaaataacaaatatttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaagttcatgccataactcttaaactgacaagaacatattgtaaataacaaatatttta 440

                                                                       
Query: 241 gaatatatacactatgatatatttataatgttaagctatttaattcttcttttagattta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatatatacactatgatatatttataatgttaagctatttaattcttcttttagattta 500

                                                                       
Query: 301 aagaatttggaaaaaaactccactaatatttgaggacacactacacaggtgccttttggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaatttggaaaaaaactccactaatatttgaggacacactacacaggtgccttttggg 560

                                                                       
Query: 361 tctgggttagtttactcaggatgttattttttagttcgattcatgtgcctgaaattttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgggttagtttactcaggatgttattttttagttcgattcatgtgcctgaaattttca 620

                                                                       
Query: 421 tactgcccttgtttttaatggctgtgtagtattccattgtgtaaatgaatcatgttttat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tactgcccttgtttttaatggctgtgtagtattccattgtgtaaatgaatcatgttttat 680

                    
Query: 481 ttatctatt 489
           |||||||||
Sbjct: 681 ttatctatt 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)