BAC Information

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BAC

Clone NameMSMg01-475D06
Chromosome10 (Build37)
Map Location 7,710,890 - 7,711,270
singlet/doubletsinglet
Overlap geneLOC100039046
Upstream geneIyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2
Downstream geneUst, Sash1, LOC100039173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475D06.T7 (MSMg01no475_d06.b1)MSMg01-475D06.TJ (MSMg01no475_d06.g1)
ACCAG557085AG557086
length704845
length of high quality
(start - end)
380 (49 - 428)133 (80 - 212)
definitionCHROMAT_FILE: MSMg01no475_d06.b1 PHD_FILE: MSMg01no475_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:54 2005CHROMAT_FILE: MSMg01no475_d06.g1 PHD_FILE: MSMg01no475_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCCTATATTCAGAAAATCCGCGGAATTCTCATGGAGTTCATATTGGCT
GAATGTCTATGTCATTGTTCAGCTAAGAAAAAAGAATCCAGGCATTCCAA
TCTAACTGGTAGACTGTTCCCTTAGGGGACATGAATGTCACACTGCCATA
GCCTTACCCCCCTTGCTGATAAGACTGTCCATGCTTCCCTTTGTCCTGGT
TTTCACACACACTGAGGATCCACCAGTCATGACTGGCTTTTTCCGTAGCC
TAGACCACAGAGTGAGAAAGGGGTACCAGGACCATGTGCATCAAGTCTTT
TTATCAAGTCAGGGATGTGGCTAGGACTACCTTCAATACTTCTCTGCTGT
GAACTGGTTTTGCCTGAGCTTATTGCCAAGAACCTGGCCAGCCAGGCACA
TTGAGCAAACTGAGTTTATAAACCAATAAGCTAAGAGTCAGAATACACAT
GTGACTCTTGTAAAGACTATCTCCGAGATAAGCCTCATATGGAAGGCCAT
CCCAAAGCCCTATGGGCTGCTACTATCTCCGAAACTCTGACTCAAGTTTG
CCTTCTCCATCAAACCTTATGGTGAGCAATAAAATGGGATCCCCTCCACT
TCATCTTGGCATAACTGGGCACATAAATCTAACTATTGCTATCTGGCTTA
TCTATCCACCTCCACCGCCATTAACTTTCTCTCTTTTTACCCCCCATTTT
TCCT
TTCTCCGATGTTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGTGATTGTTGTAATGTC
TCCATTCTCATCTCTAATTTTATTAATTCTGATTCCTCCCATGGCCCCCT
GTGTATGTGTGTGTGTGTGTCTTTTTAGGATAGACAATCTAATGGTTTGA
CACTCTTGCTTGATTTTCTCACAGAATCAGCTCTCCATTTCGCTATTTTT
CCTATTGTCTTTGTTTCTGTTTCCTTAGTTTCATTCCTTATTTTGATCAT
TTCCTACCCTCTCCTCTTTTTATTTTTACTCTTTATTTTCGTCTCACTTT
TTCTCTCTCCTTTTATTTTCTCCTCTTTTTTCCCTCCCTCCCCCCCCTCC
TTTTCTCCTTTGCTCTTCCCCTTTTTTCTTCCTCTCTCTTTTTTTTCCCC
TTCCCTCTCCCTTCTTTTCCTTTTTCCCCTCTTTCATTCTCCCCCTTTCC
TTTTTTTTTTCCCCCTTTTTCTTCTTTCCCCCTTCATTTCTTTACTTTCC
CTTCCCCCCTTCTCTCTCTCCTTTCTCCCTCCTCCTCCTCCTTTTTCTTC
TTCTTTTCCTCCCCTTCCCCTTTTTTTCCTTCCCTCCCCCTTTCTCTTCC
TTTTTCTTTCCCCCTCCCCCCTTCCTCTTTTTTCTTTTTTTTTCTTCTCT
ATATCTCACTCCTCCTTTTTCCTTCTTCTCTTTTCCTCCCTTTTTTCTTC
TCCTTTCCTCCCTTCCCCCTCTTCTTCTTCTTTTCCCTCCCTCCCACCTT
TTTTTCTCTCCTATCCGCCGCCTTTTCCCCTCCCTCTACCACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_d06.b1 MSMg01no475_d06.b1 CHROMAT_FILE:
MSMg01no475_d06.b1 PHD_FILE: MSMg01no475_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:54 2005
         (380 letters)



>mm_chr10_7710690_7711470
          Length = 781

 Score =  659 bits (341), Expect = 0.0
 Identities = 371/387 (95%), Gaps = 13/387 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaatgtctatgtcattgttcagctaagaaaaaagaatccaggcattccaatctaactg 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 581 ctgaatgtctatgtcattgttcagctaagaaaaaagaacccaggcattccaatctaactg 522

                                                                       
Query: 61  gtagactgttcccttaggggacatgaatgtcacactgccatagccttaccccccttgctg 120
           ||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||
Sbjct: 521 gtagactgttcccttaggggacatgaatgtcacactgtcatagcctta-ctcccttgctg 463

                                                                       
Query: 121 ataagactgtccatgcttccctttgtcctggttttcacacacactgaggatccaccagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ataagactgtccatgcttccctttgtcctggttttcacacacactgaggatccaccagtc 403

                                                                       
Query: 181 atgactggctttttccgtagcctagaccacagagtgagaaaggggtaccaggaccatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atgactggctttttccgtagcctagaccacagagtgagaaaggggtaccaggaccatgtg 343

                                                                       
Query: 241 catcaagt------ctttttatcaagtcagggatgtggctaggactaccttcaatacttc 294
           ||||||||      |     ||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 catcaagtccacggc-----atcaagtcagggatgtggctaggactaccttcaatacttc 288

                                                                       
Query: 295 tctgctgtgaactggttttgcctgagcttattgccaagaacctggccagccaggcacatt 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tctgctgtgaactggttttgcctgagcttattgccaagaacctggccagccaggcacatt 228

                                      
Query: 355 gagcaaactgagtttat-aaaccaata 380
           ||||||||||||||||| |||||||||
Sbjct: 227 gagcaaactgagtttataaaaccaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 781
Length adjustment: 9
Effective length of query: 371
Effective length of database: 772
Effective search space:   286412
Effective search space used:   286412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)