BAC Information

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BAC

Clone NameMSMg01-475J24
Chromosome10 (Build37)
Map Location 41,622,278 - 41,828,035
singlet/doubletdoublet
Overlap geneSesn1, Armc2, 1700016J18Rik, LOC624784
Upstream geneWasf1, Gpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik
Downstream geneFoxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389, Ostm1, Sec63, Scml4, EG666569, C230040G06, Sobp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475J24.T7 (MSMg01no475_j24.b1)MSMg01-475J24.TJ (MSMg01no475_j24.g1)
ACCAG557408AG557409
length754799
length of high quality
(start - end)		442 (21 - 462)163 (82 - 244)
definitionCHROMAT_FILE: MSMg01no475_j24.b1 PHD_FILE: MSMg01no475_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:28 2005CHROMAT_FILE: MSMg01no475_j24.g1 PHD_FILE: MSMg01no475_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,622,278 - 41,622,711)(41,827,876 - 41,828,035)
sequence
GACTCCTATAGTTCGAGAATCCGCGGAATTCCTAAACTTCATTCTATGCC
TGCCATATGTAAAATAGAGTGTTCTCTCTTCAGGTAAGTGATTCCTTCTT
TGAGGTGGAAGCTCTCATGGAAAAGATGAGGCAGTTACAGGAATGCCGAG
AGGAGGAGGAGGCTAGCCAGGAGGAGATGGCGTCGCGGTTTGAGATGGAA
AAGAGAGAGAGCATGTTTGTCTTCTCTTCGGGTAAGAACAGCCAGAATAT
GCTCAATATAGTTTCTCTTACAAGCCCAACTTTTTTATTTAGAGAATGTC
AATACATTTTTAAAAGCAGGCCTAAAGGTGTGTTCTTTCAGGAAGGCTAC
TTGTAAGGGCTTTCCTCCTTACAAATACTTAAGAAAGGCAACTAAGAATA
GCATGCCATGTAATACACCAACACTCTCCCCAGCTTTCTTGTTTGCTAAA
TGTTATTACTAGAAGTGATTGGCAGGATGTGTGAGCCACACCATGCATGC
ATGTGGAGGCCAGAGGACAACTGTCAGGACCAGTTCTTTCCTCCCCAAGT
GGGTCCTCAGAGAAACTCAGGGCATTGGGTTTTGAGGACCTTGCTTTTCC
CCCTGAGCCCCCTCCCCCATGGGATTAGTTTTTTTTAAATTTCCTCAGGC
CCCGCCGAAGGGTGGGTACTCCTTTTTTCCCCCCTCCTGTATGGCGTAGC
CGGTCTACTTTCTACTCCTATTCCTCTTGGCTTTTTTATCATTTCATTTT
ACAT

TTCTCTTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTTCCAGGTTGATTTT
TGACGACAGTTAAATGTCCAGACTCTTGGGTCATGCCTGGGCTATGAAAG
GTCCCACTGCACGGAAAAAGATAACAAAAACAAAACCCTTGGTTGCATCA
GAAGTGCTCTTTTGAGGTTAAGGGATGAGGTGGGGGAGAGGNCNNNNTNN
NNNNNNNNCNNNGNNNNGNNNNNNNNNNNCNNNNNGNNNNNNTNNTNGNN
NTNNNGNCCGCCNGCCGTGGCCCGGTTTTTTCCCCTGGCTTTTGCTTCCT
CTCTGTGTCGCGTCCCCTCTTTTCTCCCCCCTTTTTCCCCTTCCCCCCCC
CCTTCCTTTTTGTTTTTTTCCCGCCCTCGTCCTTCCTTTCTCTTTTNTTC
CCCGCCCCTCCCCCCGCCTTCCTGTTCCCCCGTGCGTCTCCCCCCTCTTC
TTTTTTTTTCCGCCCTTTCTCCTTTCCCCCTCTTTTTCCTTCTCCTTTTC
CCCTTCCTTCCCCTTCTCCCCCCCTTCCCCCTTTTCTCTTCTTCTCTCCT
TCCCCTTTCTCCTTCCTCGCCTTTCTCCTCCTTTTCCTTCCCCTCCCCCT
TCCCTTTTTCCTTTTTTCCTTTCTTTCCCGCCCTCCTTTTCCTTCCTCCT
TTCCCCTTTTTCCTCTCCCTCTTCCCCTCCCCCTTTCCTTTTTCTCCCTC
TTCCCCCTTTTTTTTCTCTTTTCCCCGCCTTTTCCCCCCGCTTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_j24.b1 MSMg01no475_j24.b1 CHROMAT_FILE:
MSMg01no475_j24.b1 PHD_FILE: MSMg01no475_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:28 2005
         (442 letters)



>mm_chr10_41622072_41622913
          Length = 842

 Score =  824 bits (426), Expect = 0.0
 Identities = 432/434 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   aattcctaaacttcattctatgcctgccatatgtaaaatagagtgttctctcttcaggta 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 aattcctaaacttcattctatgcctgccatatgtaaaatagagtgttctctcttcaggta 266

                                                                       
Query: 67  agtgattccttctttgaggtggaagctctcatggaaaagatgaggcagttacaggaatgc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agtgattccttctttgaggtggaagctctcatggaaaagatgaggcagttacaggaatgc 326

                                                                       
Query: 127 cgagaggaggaggaggctagccaggaggagatggcgtcgcggtttgagatggaaaagaga 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cgagaggaggaggaggctagccaggaggagatggcgtcgcggtttgagatggaaaagaga 386

                                                                       
Query: 187 gagagcatgtttgtcttctcttcgggtaagaacagccagaatatgctcaatatagtttct 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gagagcatgtttgtcttctcttcgggtaagaacagccagaatatgctcaatatagtttct 446

                                                                       
Query: 247 cttacaagcccaacttttttatttagagaatgtcaatacatttttaaaagcaggcctaaa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttacaagcccaacttttttatttagagaatgtcaatacatttttaaaagcaggcctaaa 506

                                                                       
Query: 307 ggtgtgttctttcaggaaggctacttgtaagggctttcctccttacaaatacttaagaaa 366
           ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 507 ggtgtgtcctttcaggaaggctacttgtaagggctttcctccttacaaatagttaagaaa 566

                                                                       
Query: 367 ggcaactaagaatagcatgccatgtaatacaccaacactctccccagctttcttgtttgc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ggcaactaagaatagcatgccatgtaatacaccaacactctccccagctttcttgtttgc 626

                         
Query: 427 taaatgttattact 440
           ||||||||||||||
Sbjct: 627 taaatgttattact 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no475_j24.g1 MSMg01no475_j24.g1 CHROMAT_FILE:
MSMg01no475_j24.g1 PHD_FILE: MSMg01no475_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:28 2005
         (163 letters)



>mm_chr10_41827676_41828238
          Length = 563

 Score =  310 bits (160), Expect = 4e-89
 Identities = 160/160 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtttccaggttgatttttgacgacagttaaatgtccagactcttgggtcatgcctggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cagtttccaggttgatttttgacgacagttaaatgtccagactcttgggtcatgcctggg 301

                                                                       
Query: 61  ctatgaaaggtcccactgcacggaaaaagataacaaaaacaaaacccttggttgcatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctatgaaaggtcccactgcacggaaaaagataacaaaaacaaaacccttggttgcatcag 241

                                                   
Query: 121 aagtgctcttttgaggttaagggatgaggtgggggagagg 160
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aagtgctcttttgaggttaagggatgaggtgggggagagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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