BAC Information

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BAC

Clone NameMSMg01-475L19
Chromosome10 (Build37)
Map Location 26,211,997 - 26,212,392
singlet/doubletsinglet
Overlap genenone
Upstream geneEpb4.1l2, 2010003K15Rik, EG667513, LOC667519, LOC628697, C030003D03Rik, LOC100040851, LOC15352, Samd3, L3mbtl3, LOC435208
Downstream geneLOC667572, LOC100040349, Arhgap18, Lama2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475L19.T7 (MSMg01no475_l19.b1)MSMg01-475L19.TJ (MSMg01no475_l19.g1)
ACCAG557493AG557494
length780754
length of high quality
(start - end)
437 (72 - 508)393 (77 - 469)
definitionCHROMAT_FILE: MSMg01no475_l19.b1 PHD_FILE: MSMg01no475_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:37 2005CHROMAT_FILE: MSMg01no475_l19.g1 PHD_FILE: MSMg01no475_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTACATGATTGCCGCATGTACATCATTTCCACTCTTACCTCCACCC
ACCTGCCTGCTACCCCTCAATAACGTCTCTGGGGCCTCCCACTCCCTCTC
AACTTTATGACTCCTTTTATAATTATCAATGTTATACACACACACACACA
CACACACACACACCTCATTATATGCATATAAACTTTCAAAATAATATGAC
TTTCACTCTCTGCTCTTCCCTGTTCAAGAAACAACTGCATCTTCTTGTGC
AGTGCCAGCCTTGTCCCATAGACTATCTGGTGAAGGTTGGTGTGATTGGA
CTTGGCCTTATTGGGCTCCTGGTTACCAGGGCTGCCTTCTGCTCTACACT
TGGCAAAGTGGAGATTGGTGCCTTCAACAGCCCCTTCATTGACATCAACT
ACATGGTCTATCTAGTATGACTCCACCCATGGCAAATTCAACAGAAAGTC
AAGGCTGAGAATGGGAATCTTATCATCAACGGGAAGCCCATCACCACCCT
TCAGGAGCGAGATCCTACTATACCCCCATGGGGCGATGCTGCGGCTGAAA
ATGTCATTGACACCACTGTCGTCTTCATAACATAAAGAATGGTGGGTGCC
ACTCTTAAGGTGTTTTTTTTATGCTTCACCTTTTTTGCACCCTTACTGTC
CATGCCCCTATATTTGGAAAAAATCGTCATTTCTACTCACCACTATACTT
CCCTTCTCTTTCCTACATTCCCAGTCCTTG
NNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGGTCTGCTCCAGAACATTTC
TAGGAGCTTACAATTCATCTAGCAAGCTTTCAGGAAACCCCTGGATCGCG
GAAAGTCCTGGAAATGCAGAGAGGGGCGCGACACGTGGTGGGTGCTGCTT
TCAATCAAAGTGCAATCTGGCAATTCTGGCACATTGGTGTTCCAGTAAGG
AGCCTAAAGGGAAACACCTGTATCTCTCCACACACGGGCTCTGTAGTCAC
TTATGGGAGATCTGCTGGTTGCTGATTTAGTGAGAAAGAACGATGTGGGA
AAAGGCACAGAAATAATTTATAGCCCCCCCCCCCCCAGGATGCTTTCATC
TTGAAATCGTGTTTGGACCGGAAACACGTTACCCACAGAGACACAGACAT
GCTAACAGTGATGATAGTCAAGACAGCAGTTAGTAACGGTGAAGAACCTC
GCGTTACCTGGATTATTTCTTAAAATCTCAAAGCTCTTTTTTTTTTTCAA
GTTCCACTCTTAGATGGTCTCACAATGAACAACATCTTTCCCCCTACACC
TCTCTTTTTCTTCACCACCCCTAGGCGGCCCCCTTTATTTCTCCCCCCCT
TTCTCCCTAAACAAAAAGGGCGTTCCCCTTTTATCGCGTCCCCCTTCCTT
TCTCTCTATCCCTCCTTTCCCTCCGCCTTCCCTCTACACCCTCTACCTTT
CTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_l19.g1 MSMg01no475_l19.g1 CHROMAT_FILE:
MSMg01no475_l19.g1 PHD_FILE: MSMg01no475_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:37 2005
         (393 letters)



>mm_chr10_26211797_26212592
          Length = 796

 Score =  673 bits (348), Expect = 0.0
 Identities = 383/396 (96%), Gaps = 3/396 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaggtctgctccagaacatttctaggagcttacaattcatctagcaagctttcaggaa 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 cagaggtctgctccagaacatttctaggagcttataattcatctagcaagctttcaggaa 260

                                                                       
Query: 61  acccctggatcgcggaaagtcctggaaatgcagagaggggcgcgacacgtggtgggtgct 120
           ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 261 acccctggatcgcggaaagtcctgggaatgccgagaggggcgcgacacgtggtgggtgct 320

                                                                       
Query: 121 gctttcaatcaaagtgcaatctggcaattctggcacattggtgttccagtaaggagccta 180
           |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 gctttcaatcaaagtgcagtctggcaattctggcacattggtgctccagtaaggagccta 380

                                                                       
Query: 181 aagggaaacacctgtatctctccacacacgggctctgtagtcacttatgggagatctgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagggaaacacctgtatctctccacacacgggctctgtagtcacttatgggagatctgct 440

                                                                       
Query: 241 ggttgctgatttagtgagaaagaacgatgtgggaaaaggcacagaaataatttatag--- 297
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 441 ggctgctgatttagtgagaaagaacgatgtgggaaaaggcacagaaataatttatagggt 500

                                                                       
Query: 298 cccccccccccccaggatgctttcatcttgaaatcgtgtttggaccggaaacacgttacc 357
           |||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 cccccccccctctaggatgctttcatcttgaaatcatgtttggaccggaaacacgttacc 560

                                               
Query: 358 cacagagacacagacatgctaacagtgatgatagtc 393
           |||||||| |||||||||||||||||||||||||||
Sbjct: 561 cacagagaaacagacatgctaacagtgatgatagtc 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 796
Length adjustment: 9
Effective length of query: 384
Effective length of database: 787
Effective search space:   302208
Effective search space used:   302208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)