BAC Information

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BAC

Clone NameMSMg01-475M11
Chromosome10 (Build37)
Map Location 44,707,969 - 44,708,197
singlet/doubletsinglet
Overlap geneEG215974
Upstream geneAim1, LOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529
Downstream genePrep, Popdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475M11.T7 (MSMg01no475_m11.b1)MSMg01-475M11.TJ (MSMg01no475_m11.g1)
ACCAG557525AG557526
length757741
length of high quality
(start - end)
486 (80 - 565)231 (84 - 314)
definitionCHROMAT_FILE: MSMg01no475_m11.b1 PHD_FILE: MSMg01no475_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:40 2005CHROMAT_FILE: MSMg01no475_m11.g1 PHD_FILE: MSMg01no475_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GCCGCGGAATTCCTACAGTTGCCCAAAAACTTCAGAAATGTGCCTGGATA
TAAAATTAACTCATACAAATCAGTAGCCTTCCTATACTCAAAGGATAAAC
AGGCTGAGAAAGAAATTAGGGAAACGACACCCTTCACAATAGTCACAAAT
AATATAAAATACCTTGGTGTGACTCTAACCAAGCAAGTGAAAGATCTGTA
TGACAAGAACTTCAAGTCTTGAAGAAAGAAATTGAAGAAGATCTCAGAAG
ATGGAAAACTCTCCCATGCTCGTGGATTATCATGATTTACATAGTAAAAA
TGGCCATCTTGCTGAAAACAATCTACAGATTTAATGCAATCCCCATCAAA
ATTCTATCTCAATTCTTCATAGAGTTAGAAAGAGCAATTTACAAATTCAT
CTGGAATAACAAAAACCTAGGATAGTGAAAACTATTCTCAACAATAAGAG
AACTTCTGGGGGAATCACCATCCCTGACCTCAAGCTGTATTACAGAGCAA
TTGTGATAAAAAAACTAAACCAAACAAACAAAAAACAACTACCACCAACA
ACAAACAACTGGTAGGTATTGGTACAGAGACAGGTAGAAAGATCAGTGGA
AAAGAATTGAAGACCCCTAAATGAACCCCCCCCCCTATGGTCACTTGCTC
TTTGACAAAGGAGCTCCAACCATCCTGCCGGAAAAAAGACAGCATTTTCA
TCTAAAG
NNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGGAGACCAGGCTGGCCTCG
AACTCAGAAATTTGCTTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTG
TGTGCCACCACTGCCTGGCAGAATCTGGTTTGATTAGCATCAGAATGCCT
TGACCAACCCCACTCCCAAGTAGTTAAAGAATGGGCATCCTAACAGTTAG
ATTGGCCAGTTGAGCCATTTGAACTAAAGTATGGTTTGTTGTTGCTTCCT
TTCTGTGTATCCTNNCTGCTGGGAAACTCTTGCTCACCTATCTGCTTGAC
TCTAAGCCCTTTCCACTTTTAAAACAGAATACTTTCACCCAGTCTCAGGA
AGTCTCCACAGGTTCTTAGCTCCTGGGGGGGCGGTTGGGGGTCGGGGGAA
TGAAGTCCAACGTCCTAGTCTTTGCTTTACCATCCAAGGCTGTGTCTAAT
ATATACCAAATCCCTACCTTGTTCCCGATTCTGGTCATTGGCCTTCTCGA
TGCCTAACTTTCTGCACATCTCATATTCTATCGTCGTCTCGCTTCTGCTA
TATTTTTCTATATTCATCCCTTTTCATTTTTTTTTTTTTTTTTTTCTTTC
CCCCCCCTCCCCCTCCTCCTTTTTTCCTCCTCTCTTACCCCCTACCCATC
TTTCCTTCCCTCCCTTTCCTCTCCTTTTACTCTTTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_m11.g1 MSMg01no475_m11.g1 CHROMAT_FILE:
MSMg01no475_m11.g1 PHD_FILE: MSMg01no475_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:40 2005
         (231 letters)



>mm_chr10_44707649_44708279
          Length = 631

 Score =  420 bits (217), Expect = e-122
 Identities = 226/229 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaccaggctggcctcgaactcagaaatttgcttgcctctgcctcccaagtgctgggatt 60
           ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 549 agaccagactggcctcgaactcagaaatttgcctgcctctgcctcccaagtgctgggatt 490

                                                                       
Query: 61  aaaggtgtgtgccaccactgcctggcagaatctggtttgattagcatcagaatgccttga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 489 aaaggtgtgtgccaccactgcctggcagaatctggtttgattagcatcagaacgccttga 430

                                                                       
Query: 121 ccaaccccactcccaagtagttaaagaatgggcatcctaacagttagattggccagttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ccaaccccactcccaagtagttaaagaatgggcatcctaacagttagattggccagttga 370

                                                            
Query: 181 gccatttgaactaaagtatggtttgttgttgcttcctttctgtgtatcc 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gccatttgaactaaagtatggtttgttgttgcttcctttctgtgtatcc 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)