BAC Information

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BAC

Clone NameMSMg01-476A09
Chromosome10 (Build37)
Map Location 108,209,228 - 108,209,395
singlet/doubletsinglet
Overlap geneSyt1
Upstream geneEG628870, Ppp1r12a, Pawr, EG667814, EG368203
Downstream geneNav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476A09.T7 (MSMg01no476_a09.b1)MSMg01-476A09.TJ (MSMg01no476_a09.g1)
ACCAG557712AG557713
length786771
length of high quality
(start - end)
61 (85 - 145)169 (87 - 255)
definitionCHROMAT_FILE: MSMg01no476_a09.b1 PHD_FILE: MSMg01no476_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:59 2005CHROMAT_FILE: MSMg01no476_a09.g1 PHD_FILE: MSMg01no476_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAGAAATTGGCGGCGGTGGAGGAGTGGATTTCCAATAGAGACGGCGGAAT
TCTTTGGTTACATCTATACGCCATTTTGNAATTGAGGTATTTTTTTCTTG
ATATCAATTTTAGTCAGATTTTTAAAAATATATTCTAGATATTAGCCCTC
AATCAGAATTTAATTGGTAAACATCTCTTCCCTTTCTGTAGACTGCTGCC
TTTTTCCAAATGACGAGGCCTTTTGCCATGTAAAAGATTCTCAATTTCAT
GAAATCCCACTTATTAACCGTTGGGCCTAGTGCCTGCGCTAATGATATTC
TGTGCAGAAAGTCTTTTTTTTTGTTTGTCGAGCGTAAGGTTATTTCCCAC
TTCCTATATTACCCCGTCTCACCATACTTGTCCCTCATGCGCTGTCCCTT
GATTTATACGGTGTTGTTCCGTTCATTACCGACTGCGATTCATTGCCTTC
CCCCAGTCTCATTGTTATTACCGTTCCTTTGTGATCTAAGTATCCCCTTT
ATCTTCTCGAGTCTTCTTTGCACTTGCCTTCTTTTATTCTATTGCCTGTC
CTTCTCTTCTTCGTTTCCTCCCTTTTTCCCTTACTTCACGTGTTTCCTTT
CACTTTCCTCTCCCTTTTCTTGCCTTTTTCGCCCCATTCTTTTATTTCCT
TTCTCCTTCCCTTCCTTTTTCCTCTCCCTTTTACTCCCCCTGTTTTACCC
CATCTGCTCTTCCCTTTTGTCTTTTTTTTCCCCCTTCCCCCCCCTATTTT
TACGTTTCCCCGGACCTGTTCTCCTCCCCGCATCTT
CCGAATGCAGCGGGTAGGNCTGGGGGNCGCCTGTTCAACAATCTTTAGGN
GACACNANAGAAGTACCTAGAATAATTCTCATTGANTAAAGTAGATGATT
TAAGTGACTTATTTCTAACTGTTCATCTTTAAAACAGTTGAAAAATTTGT
ATCAGTGTAGGTTTACTCTAAAACGGAACTGTATGACATTTGCAATTTAT
AAGATCAATGAATGTATGTTATTTGTTGGTGGTGTTGTTATCGGTTAGTT
TTTGTTTTATAGCATATTTGAATGTATACACTGTATAATCACATTTACAA
GTAAACCTTAAGATGAAAGTTCCTAGTTGTTCTCAAACTCCTACAAACCC
CGTTTTGGCATTTTCTGCCACATAACTATCCAAATCCCTAGAGTATACCA
CCTAATCCAGTGTAGATCTAGTCATCTTATATGTGTCTCAACATATTTTT
CTTTGATTTATCCACTACATTGCCCCAGTGCTCTTTTTGATCCACACTTT
TATTGCTAATATCCACCATAGTTATTTTTTGCTGTCCTTTTCCATTTTCC
CCCCCTATCCTTTCCTCAGTCCCCCTTCTTTATCTATTTATTATTTCCTC
CCATTCTCCTCTCCCCCCCCTCCTCTTTCTCCCCCCCTTTTCTTTCTCTA
CAACTTCCGCACTTTCCCTTTCTTTTATTCCTCTCCCCTTTTCCCCCCCG
CCCCCCTTTTGTTTTTATTTTCTCCTCCCCCTCCCTCTCTCGCCCGCCTT
TTTTCCCTTCTTATCTCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_a09.g1 MSMg01no476_a09.g1 CHROMAT_FILE:
MSMg01no476_a09.g1 PHD_FILE: MSMg01no476_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:00 2005
         (169 letters)



>mm_chr10_108209028_108209596
          Length = 569

 Score =  317 bits (164), Expect = 2e-91
 Identities = 167/168 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagtagatgatttaagtgacttatttctaactgttcatctttaaaacagttgaaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaagtagatgatttaagtgacttatttctaactgttcatctttaaaacagttgaaaaat 260

                                                                       
Query: 61  ttgtatcagtgtaggtttactctaaaacggaactgtatgacatttgcaatttataagatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtatcagtgtaggtttactctaaaacggaactgtatgacatttgcaatttataagatc 320

                                                           
Query: 121 aatgaatgtatgttatttgttggtggtgttgttatcggttagtttttg 168
           |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 aatgaatgtatgttatttgttggtggtgttgttatctgttagtttttg 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)