BAC Information

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BAC

Clone NameMSMg01-476E23
Chromosome10 (Build37)
Map Location 52,173,357 - 52,173,606
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e
Downstream geneEG629689, Zfa, Slc35f1, Pln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476E23.T7 (MSMg01no476_e23.b1)MSMg01-476E23.TJ (MSMg01no476_e23.g1)
ACCAG557932AG557933
length779818
length of high quality
(start - end)
250 (69 - 318)246 (69 - 314)
definitionCHROMAT_FILE: MSMg01no476_e23.b1 PHD_FILE: MSMg01no476_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:23 2005CHROMAT_FILE: MSMg01no476_e23.g1 PHD_FILE: MSMg01no476_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCCT
ACAGATGTCACATACTTCAGCAAAGTAGCAGGGTACAAAATTGATACACA
TGAATCAGTAAATTTTCTATATGCAAATGACAAATGAATTGAAAAAGAAA
TCATAAAACAACATCTTTTACAATAGCCTTAAAAACATAAAATATAGTGG
TGTAACTCCAACCTAACAAGTGAAGGACTTGTATTATAAAAACTTTAAGA
AACTGAAGAAGATATTAGAAGTTGGAAAGGCCTCCTATACTCATGGATCA
GTCAGATAACTATAGTAATTTTTTTTGCATACACAGGACTCATCCTGATG
GGGTCCCAGTGCTGAAACGGGAAGTGGACATGAGCCCCGCCCCCTCTCCC
AGAAGTTATCTCTAATTGATAACCATTCACAAAGGACAAATTAGGTTTCT
CCATCAGAGTCTAACTGAGAACAAAACCATTCCTAAGGCTCCCTTCTCTC
TCCCCTTCTTTCTCTCTCTCATCCCTCTTTCCTTCCTTCCTCTCTTTTTC
TTACCTTGTAGGGCTTTTGCTTGCGTATCATGAATTCTAATTTTGCATCT
TTATGAGATTTCCCTGAATGCCAGTGCGTGCGTTTCTGGATCCATCTGTG
CTTCCCGTGCTTTTTATTTGTTTCTTCATCCACCCGTTTGCTTGCGCTTT
TGTCCCTCTCACATTTCCTTCTTTTTCTTATACCCCCTCCCCCTAAATTT
CTCCCCCCATCCTTTCTCTCCCCCTATTN
AATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGAGCCGGCCCGCGCTACCAGGGACCCTGTCT
CAAAAATACAACACCCACAAAAAAACATAGCTTTACTGTAATCCCGCACC
ATTTGCTCTTGTTTATGGTATACTGCAACTTTGCTCATATTGTTGGGTTT
AGTAGGAATCGGCTTCTGTTTCTGCAATGTTAGAATCTTTCACCTTTTGT
TTAAAGATCCATGGGCAGTGCTGCTGCTTCTGTGGCGTCTTCTTCGTTTC
TCCCAATTAGATGCAGTCTCTGNTTACACGAGACACCCCACCACACAGAA
TTTTCTGCTTTTTATCGGACAGACTTCCTATGTCTGAGATGCAGTAGTTT
CTAAAAAAGTATTTTAGCGCATTATTGAAGTGGAAACTTTAAGCATTCTT
TGGAAAGTCAGGTCTGTTGGACAGTGTTTCGTTGGCCAAACGTGAAGGAA
TGCTTATCTGATGCACATCCATGATAAAGCATGCTCTCGTAATGCACATT
CACGATTTCGACATGGCATGGATCACCCTTTGCTTACTCACATATATGTC
ACTGTTACCTCCCTTATTTTCGAATCCCTCCATGCTCCTTTTGCCCCCCA
TTCCTTTTTATACCCCCTCTTTTTTTTTTTCTCTCCTGTCGCCTTCTTTT
CCTTCCCCCCTCCCTTTCCTCTCCTCCTTTTCTCTCTCCCCTCCCCCCCT
TTTCCTTTTTTATATTTCTGCCCCCTCCCTTTCCTTCTCCCTCCTATTTA
ACCCTTTTCCACTCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_e23.g1 MSMg01no476_e23.g1 CHROMAT_FILE:
MSMg01no476_e23.g1 PHD_FILE: MSMg01no476_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:23 2005
         (246 letters)



>mm_chr10_52173157_52173806
          Length = 650

 Score =  437 bits (226), Expect = e-127
 Identities = 243/250 (97%), Gaps = 4/250 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagccggcccgcgctaccagggaccctgtctcaaaaat---acaacacccacaaaa-aa 56
           |||||||||||||| ||||||||||||||||||||||||   ||||||||||||||| ||
Sbjct: 201 tgagccggcccgcgataccagggaccctgtctcaaaaataccacaacacccacaaaataa 260

                                                                       
Query: 57  acatagctttactgtaatcccgcaccatttgctcttgtttatggtatactgcaactttgc 116
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatagctttactgtaatcccgcaccatttgctcttgtttatggtatactgcaactttgc 320

                                                                       
Query: 117 tcatattgttgggtttagtaggaatcggcttctgtttctgcaatgttagaatctttcacc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatattgttgggtttagtaggaatcggcttctgtttctgcaatgttagaatctttcacc 380

                                                                       
Query: 177 ttttgtttaaagatccatgggcagtgctgctgcttctgtggcgtcttcttcgtttctccc 236
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttggttaaagatccatgggcagtgctgctgcttctgtggcgtcttcttcgtttctccc 440

                     
Query: 237 aattagatgc 246
           ||||||||||
Sbjct: 441 aattagatgc 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 650
Length adjustment: 9
Effective length of query: 237
Effective length of database: 641
Effective search space:   151917
Effective search space used:   151917
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)