BAC Information

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BAC

Clone NameMSMg01-476J19
Chromosome10 (Build37)
Map Location 123,349,867 - 123,350,328
singlet/doubletsinglet
Overlap genenone
Upstream genePpm1h, D630033A02Rik, Mon2, Usp15, LOC100042958, AI851790
Downstream gene4930503E24Rik, LOC671416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476J19.T7 (MSMg01no476_j19.b1)MSMg01-476J19.TJ (MSMg01no476_j19.g1)
ACCAG558161AG558162
length805819
length of high quality
(start - end)
466 (42 - 507)326 (72 - 397)
definitionCHROMAT_FILE: MSMg01no476_j19.b1 PHD_FILE: MSMg01no476_j19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:46 2005CHROMAT_FILE: MSMg01no476_j19.g1 PHD_FILE: MSMg01no476_j19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACCTATTAACCACTAAATGGATATTGCCAATTGAAGACCAAGTTAGATT
TCCATGGGGAGTGTTTTTTTTTTCTCTCTCTCTCTCCTAGATGAAATAGG
CTAAAAACTTATAGGATCCGAGGATGTACTAAAATATTTAATATGCAGAG
CTTGCAGAAAAGTAAAAAGCTAAGACTTCAAAGGGGTCACAGGGGCCAAG
CAAAATGGTCTTTCTGGCAGAACAAATACTAAGTAATCCAAATGCTATCC
AGCATTAAAAACTTTTGTTTTCTGTACCAACCCTCCTCAACAAGAACTCC
GTACATGTTCTCCTTCTCCTCCTGTCATGTTTCCCACACACTGTCATGCT
CAGTCAGTCTAGGCTTATCTGTGCCATCTCAGTGTCTGGCTTTAGTTTCT
CGAGAGTCTCCTCAAACTCTCCTCAATGTTTTCTCTGAGCATTCTACCCA
TGTCAAACTTGTCATTATTTGAAGTAATAGGACCCACTATATGCTTCTTG
TCTTCCTCCATCACCAAATTGTCCCGTCTGTATTGTTCCTTCCCGTGCCC
CACTTTATTCCATCCGTCGTCCTATTCCAATCTCCTTCCTCCCATCTGCC
TTACTTTCTTCCTTTTTATTCCCCTTGCGGGATTCTCTTCCCTCTCCTGC
TATCTCCCATCCTCTTGCTTTTTTCCGTTTCTTTCCCCTCCCTTACTTAT
TTGTCCTTTCTTCCTTCTCTTACGTTTGCCTCTCCTTCTGCCTAATCCTC
TTTCT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGACAGGACATCAGTGATGTGAGCCACAA
AGAGTGTAAGCAGAGCAAGCAGGGATGCAAGAAAACACCCTTTAGGAGAA
GAGCAGGCCTTTTGGGGTGGGAATCTAGCAGTATTGGTTTGGCAAATGAT
CATGTTGTCAACTCTCCTTCTCAGAGCCCATGTTCACTCCCAAAGGTCAG
AGCTGTGGTGCCCAGCTTTTGTTTCTGAAGCTTCTTATGGCAGTGGGATG
GTCATTAATGTTAACTTTTTTCTGTCTGAGTGGGATGGTCATTAATTTTA
ACCCATAGCTGTCCTACCAGGCTGGGGGAGAAAGATGTCATTTTCTTCAG
TGCTGTACCTGCTGATAAGTTTCCTGTGTCCTATTAAGTAACTCCCCACC
CCTGCTTGGCCGAATTTCCTTAGACTGTGACTTCTTCAAAGCTTCGATCT
GTATGCACCGGTTTGGTTCACTTGTTATTCCATTCCTACTTATCCCCTTC
TCCTTCTCCTCTATTTTTTCCTTTTCTCTCCTCCTTTTTTTTCTCTCACT
CTTTATTCCCCCCTCCCTTGCCTCTCTTTTTCACTCCCCTCCTTCTTTTT
ACTTTTTCCTTTCCCTCCCCTTCTCTTTTTTCCTCCCCCCCCCCCCCCTT
TTTTTTTTTCCCCTCCTTCCCCCTTTTTTCTTCTTCCCCCTTTTTCTATT
CTTATCGTCTTCTTCCCCCCTTATTTTTTTTCTCCCCCTCCCCCCCCCCT
CTTTTTTCTCTTTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_j19.b1 MSMg01no476_j19.b1 CHROMAT_FILE:
MSMg01no476_j19.b1 PHD_FILE: MSMg01no476_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:46 2005
         (466 letters)



>mm_chr10_123349663_123350528
          Length = 866

 Score =  816 bits (422), Expect = 0.0
 Identities = 452/462 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacctattaaccactaaatggatattgccaattgaagaccaagttagatttccat 64
           ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gaattcacctaataacaactaaatggatattgccaattgaagaccaagttagatttccat 607

                                                                       
Query: 65  ggggagtgttttttttttctctctctctctcctagatgaaataggctaaaaacttatagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggggagtgttttttttttctctctctctctcctagatgaaataggctaaaaacttatagg 547

                                                                       
Query: 125 atccgaggatgtactaaaatatttaatatgcagagcttgcagaaaagtaaaaagctaaga 184
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 atctgaggatgtactaaaatatttaatatgcagagcttgcagaaaagtaaaaagctaaga 487

                                                                       
Query: 185 cttcaaaggggtcacaggggccaagcaaaatggtctttctggcagaacaaatactaagta 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cttcaaaggggtcacagaggccaagcaaaatggtctttctggcagaacaaatactaagta 427

                                                                       
Query: 245 atccaaatgctatccagcattaaaaacttttgttttctgtaccaaccctcctcaacaaga 304
           ||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct: 426 atccaaatgctatccagcattaagaacttttgctctctgtaccaaccctcctcaacaaga 367

                                                                       
Query: 305 actccgtacatgttctccttctcctcctgtcatgtttcccacacactgtcatgctcagtc 364
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 actccgtacgtgttctccttctcctcctgtcatgtttcccacacactgtcatgctcagtc 307

                                                                       
Query: 365 agtctaggcttatctgtgccatctcagtgtctggctttagtttctcgagagtctcctcaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agtctaggcttatctgtgccatctcagtgtctggctttagtttctcgagagtctcctcaa 247

                                                     
Query: 425 actctcctcaatgttttctctgagcattctacccatgtcaaa 466
           ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 246 actctcctcaatgctttctctgagcattctacccatgccaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)