Query= MSMg01no476_m05.b1 MSMg01no476_m05.b1 CHROMAT_FILE:
MSMg01no476_m05.b1 PHD_FILE: MSMg01no476_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:58 2005
(470 letters)
>mm_chr10_107128454_107129321
Length = 868
Score = 868 bits (449), Expect = 0.0
Identities = 462/467 (98%), Gaps = 2/467 (0%)
Strand = Plus / Minus
Query: 1 tttagccaacaattggaactctggcctctgttaaatacttcagcaactgtggtgatgggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tttagccaacaattggaactctggcctctgttaaatacttcagcaactgtggtgatgggg 606
Query: 61 aattagcaccacagaagcagctgctagccaatacactctaacacgttgaatattgttcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aattagcaccacagaagcagctgctagccaatacactctaacacgttgaatattgttcac 546
Query: 121 tacaggcataccgattttgtttgtttgtttttagcaactatgaggctctatgtattctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tacaggcataccgattttgtttgtttgtttttagcaactatgaggctctatgtattctga 486
Query: 181 aatacacaaaacgtatatagatgaataagaagcttttcttttctgttttggactgacgta 240
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaaacacaaaacatatatagatgaataagaagcttttcttttctgttttggactgacgta 426
Query: 241 tttgctcgatgatgtttactggtcagtcctgccctcctccctgagcaataatacttatta 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tttgctcgatgacgtttactggtcagtcctgccctcctccctgagcaataatacttatta 366
Query: 301 ttgtgcttcttggggattagaaaccaggaaaatccagtctaacccactctgccatcacca 360
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 365 ttgtgcttcttggggattagaaaccaggaaaatccagtctaaccca--ctgccatcacca 308
Query: 361 gtttcattagcttagtcaaatgacaagagaagagagctaaaatttgatccgtgtgatcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtttcattagcttagtcaaatgacaagagaagagagctaaaatttgatccgtgtgatcaa 248
Query: 421 gtgatatctcccaggcacaagtgttcagcatctcaactggcacatgg 467
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gtgatatctcccaggcacaagtgttcagcatctcaactggcacatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 868
Length adjustment: 10
Effective length of query: 460
Effective length of database: 858
Effective search space: 394680
Effective search space used: 394680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no476_m05.g1 MSMg01no476_m05.g1 CHROMAT_FILE:
MSMg01no476_m05.g1 PHD_FILE: MSMg01no476_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:58 2005
(514 letters)
>mm_chr10_106954319_106955231
Length = 913
Score = 948 bits (490), Expect = 0.0
Identities = 508/514 (98%), Gaps = 1/514 (0%)
Strand = Plus / Plus
Query: 1 ttttttatttttgaggttatacttatattatttctgccttccctctcctccctcagcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttttatttttgaggttatacttatattatttctgccttccctctcctccctcagcaac 260
Query: 61 ccccacccccacatacttcttttgctctttttcaaattcatggcctctttatgcccacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccacccccacatacttcttttgctctttttcaaattcatggcctctttatgcccacca 320
Query: 121 tgaattgctattgaattttttaatggtaaaacatgatcaagactgcaaaggctattatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaattgctattgaattttttaatggtaaaacatgatcaagactgcaaaggctattatct 380
Query: 181 caatttaggtaataatgaaatgaaaaacatgacacaggcactcaactagattctccagta 240
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 caatttaggtaataaagaaatgaaaaacatgacacaggcactcaactagcttctccagta 440
Query: 241 ttttattatattgtaagttatgctgaagttaatagtcctgcagtagacagtaagctagtg 300
||||| || ||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 441 ttttagta-attgtaagttatggtgaagttaatagtcctgcagtagacagtaagccagtg 499
Query: 301 aattgcgtgtgctctgtgtctgcgcaccttccatggcatccagagagtccatcttctgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aattgcgtgtgctctgtgtctgcgcaccttccatggcatccagagagtccatcttctgaa 559
Query: 361 gtgtggagtagttaacaaaacagaccggctgatgtcctcctttatttgataaaagatcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtgtggagtagttaacaaaacagaccggctgatgtcctcctttatttgataaaagatcca 619
Query: 421 gaatgcactggtgtaagaagatatactgtgcctggacaacaaggaacaaacactgagatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaatgcactggtgtaagaagatatactgtgcctggacaacaaggaacaaacactgagatc 679
Query: 481 aatgccagggtatcaatgtttcttctaaagtggg 514
||||||||||||||||||||||||||||||||||
Sbjct: 680 aatgccagggtatcaatgtttcttctaaagtggg 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 913
Length adjustment: 10
Effective length of query: 504
Effective length of database: 903
Effective search space: 455112
Effective search space used: 455112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
