BAC Information

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BAC

Clone NameMSMg01-476O01
Chromosome10 (Build37)
Map Location 115,928,423 - 115,928,681
singlet/doubletsinglet
Overlap geneCnot2
Upstream geneLgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik, Ptprb, Kcnmb4
Downstream geneLOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476O01.T7 (MSMg01no476_o01.b1)MSMg01-476O01.TJ (MSMg01no476_o01.g1)
ACCAG558363AG558364
length759750
length of high quality
(start - end)
254 (67 - 320)565 (77 - 641)
definitionCHROMAT_FILE: MSMg01no476_o01.b1 PHD_FILE: MSMg01no476_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:08 2005CHROMAT_FILE: MSMg01no476_o01.g1 PHD_FILE: MSMg01no476_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGAAGTTACCTATAGGTCATATTTACCCTCAGACTCACTGAGAAAA
GCATCAGCTACTATACTCAAATGTAGAGTATCGACAAAGAAATCTACACA
ATTCAAAGCGGGGAATTTTCTTTGACAAGGTGATTTTATAAAAAAAAAGC
AAAGTTACAAACCAAAATGCAACCAAATAATTAACCTTCCCTACAGTCCA
TTCCCCTTCAATGTTGACACACAGGAATGACTAACAGTGAGCCTCTGCAA
CTCTCCTGCACGGAATGATCTGTTTATGAACAGTCAACACCCTTTCTGCT
TTAAAAAAATTCACCCCGTGTAAAAAACTACATAATTTGAAAATACGTGA
CTGGGTGAGATTATAATTTGGCATTCATAAAATATTTCCAATAATAATAT
TATTAATAATTAATAAAGTTGAATCTACTTTATTTAGACATAATACTTTA
AAAGGTATATGAGCATTTAAAAGATATATATAATAAAACTTGAGCAGACC
AAACAAAGATACAACATACGGAAGAATAGAAATTGAAGTACATAATAAAA
CACCAACCCACTGATTCTCATTACTAACAAAGTTATTAAGTAAAACACCA
ATTTGAATTGATCAATCAAATAATTAATAATAATTAATAACAATATTGAT
ATTTATTAGTCTAAGTCATACAAACCTCTTATGAAACTTAAAAACTTTGC
TATTAATAA
GCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACAAGAGGTACCATGTTTGGTA
GAGTCAGCAGAAAGAGGGGAGCCACGAAGGACATGCACACTGAACCTGCA
GATGGAAAGCAAGAGACATACACACATACATACATCATACGTACATACAT
ACATACATACATACATACATACATACATACACACACACATACATGCATAT
ATACATACATACATACACACACACATACATGCATATATATATACATACAT
ACATACATACATACATACATACATACATACATACATACATACATACATAC
ATACATATGGGACCCAAGCCATTATTGGGGTCAGGGTGTTAGTTAAGTAG
GTTTTCTACAGGAAATGCTAGCAGATGGATCTATAGCAAGAAAGTATAAG
TTCTGTGGGCCCACACGGTGAGTGATGTGGTCACTGTGGCTTATCTACAC
AGTCCAGGAAGGAGGTGGAGGCCAGCGGAGTAGGTCAACAAACTTGTATC
TAGCTGCTTCACAAGGGCGTGTTTACCAGAAGAAGTTATAGAAGATTTGA
ACTGGCCACATTGAGGTCCTGGGGAAATGGGAGAACTGGAGATCCTGTTG
CAGGTAACTTAGTCCTGCTTAGGGTGAGATGCCTATCATACTCAGAATAG
ATGCAAGACATCTACAAATCATAGGAACTCATTTCAAATGCTTACACCGT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_o01.b1 MSMg01no476_o01.b1 CHROMAT_FILE:
MSMg01no476_o01.b1 PHD_FILE: MSMg01no476_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:08 2005
         (254 letters)



>mm_chr10_115928223_115928881
          Length = 659

 Score =  474 bits (245), Expect = e-138
 Identities = 254/259 (98%), Gaps = 5/259 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggtcatatttaccctcagactcactgagaaaagcatcagctactatactcaaatgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggtcatatttaccctcagactcactgagaaaagcatcagctactatactcaaatgtag 260

                                                                       
Query: 61  agtatc----gacaaagaaatctacacaattcaaagcggggaattttctttgacaaggtg 116
           ||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtatctattgacaaagaaatctacacaattcaaagcggggaattttctttgacaaggtg 320

                                                                       
Query: 117 attttataaaaaaaaa-gcaaagttacaaaccaaaatgcaaccaaataattaaccttccc 175
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttataaaaaaaaaggcaaagttacaaaccaaaatgcaaccaaataattaaccttccc 380

                                                                       
Query: 176 tacagtccattccccttcaatgttgacacacaggaatgactaacagtgagcctctgcaac 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacagtccattccccttcaatgttgacacacaggaatgactaacagtgagcctctgcaac 440

                              
Query: 236 tctcctgcacggaatgatc 254
           |||||||||||||||||||
Sbjct: 441 tctcctgcacggaatgatc 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 659
Length adjustment: 9
Effective length of query: 245
Effective length of database: 650
Effective search space:   159250
Effective search space used:   159250
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)