BAC Information

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BAC

Clone NameMSMg01-477A16
Chromosome10 (Build37)
Map Location 72,879,483 - 72,880,152
singlet/doubletsinglet
Overlap geneLOC432471
Upstream geneZwint, LOC544705
Downstream geneLOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477A16.T7 (MSMg01no477_a16.b1)MSMg01-477A16.TJ (MSMg01no477_a16.g1)
ACCAG558488AG558489
length818773
length of high quality
(start - end)
---670 (75 - 744)
definitionCHROMAT_FILE: MSMg01no477_a16.b1 PHD_FILE: MSMg01no477_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:21 2005CHROMAT_FILE: MSMg01no477_a16.g1 PHD_FILE: MSMg01no477_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTCCCCATTCTTCTTCTTTCCTCCCTTCCCCCTCTCTCTTCTCTGTC
GTTGTCGTGTTTTCGGTTACTTCCTTTTTTGCTTCTCCTCCTTCCTTCAC
CCCCTCCCTCCCTCCTTTTCCTCTCTCTCTCTGTTCCTNTTCCTTTCTTT
TCTTCGTGGGGNTTTCCNCCCNCGNNNTGTCTCCTTATTAAAATTTTTTG
CCGGGGGCCGCGCCCTTTAAATTTACCCGGAAACTTCCCCCCTTTAATTT
AGGGGGTTGTTACTCCCCGGATATATCCCCCGCCCGGGGGAAAAATTTTC
CCCTTTTTCCCCCTTTGGGGGAATTCTCCCCCCCCCCCGAAATTTAAAAA
AGAAAGGCCCCCCACGCCCCCTTTTTTTATAATTGGGGTTTTTTTTTTTT
TTGGGGTTTTTGGGGTTTTTGGGGGGGGTTTTTTTTGTCTCCCCGGGGGG
GTTTTTTTTTTTTTTGTTTCTTTCTGCCCTCTGCCCTTGCTCTCTTTTTT
TTTTTTTTTTGTGGGAGAAAAACAACAAAAAAAAACCCCCCCCCCTCCCC
CTAAAAAAAAAAAATTTTTTTTTTTTTCTCCCCCCCCCCCTCTTTGTTGT
GGTGCCCCCAAAAAAATAATAAATAAAAAGAAGTTTTTTTTTTATTCACA
ACCACAACAAACCCCCTCCCCCCCCGGCGAGGGTATTTTTTTTTTTTTTT
TTTTTTTTTTGTGGGGGGGGGGGAAACACCCACCCCCCCCCCCCCCGCGG
GGGGCGGTTGTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGCG
CGCCGCCCCTCCTCCTCC
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGGTTATTAAATCTGAAAAAGATCT
GAATGGATTTTGGAAACTAGATTCTAAGTTATTTAGCAAAGAATCTGAGG
CTGAAGATCTGTTCAGAGTGTTAAAGGGAGTGAAGGATATTTAAAAACTG
AACTAAATTTTATAGGATATAATGTGATATGTTGTGGGAGGATACAGTTG
TGAGTCAGAAAGTCAATCCAAGGAATCAGAGACGGGAGAAATATAAAACA
TCCTCTTTCAATGTCCTTACCTATCTCTCTTCATGCTGTCTTCTGATTCT
TGGTTGGGATTATTGTTTGAAAATACAATATAAAAAAGATAATATTAATA
AAAATATTCACCATCAGAGATGTGCTCTGAGATATCACGGCAGGCAGGCA
GCATGAGAATTTTGAAGGTATTAATTTCAATTTAACCACACTTATAGAGG
ATTACCACTGAGTGGCTCGGGTTTTACTCTTGACTGCTGTTTTATTTATT
TATTTTCCCTGGCAGATTGAGAGATTCAGAACCATTCCACTGAGTGCTCT
AAGTACCTGGCATAAGTTTCTACATAGCTATTAATTCCCTTTCTGGTCTA
CCACGCAGCTTTTATTTAGGAGGGGTTTAGAAGCAAAGACTCCACACTCC
TGGCTTACTATTATTCTCTATTTTTAGAGAGCAAGCAGCATTCGCTTGTA
GCACGACATGGTGCACTCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_a16.g1 MSMg01no477_a16.g1 CHROMAT_FILE:
MSMg01no477_a16.g1 PHD_FILE: MSMg01no477_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:21 2005
         (670 letters)



>mm_chr10_72879283_72880352
          Length = 1070

 Score = 1272 bits (658), Expect = 0.0
 Identities = 667/670 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggttattaaatctgaaaaagatctgaatggattttggaaactagattctaagttattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggttattaaatctgaaaaagatctgaatggattttggaaactagattctaagttattt 260

                                                                       
Query: 61  agcaaagaatctgaggctgaagatctgttcagagtgttaaagggagtgaaggatatttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaaagaatctgaggctgaagatctgttcagagtgttaaagggagtgaaggatatttaa 320

                                                                       
Query: 121 aaactgaactaaattttataggatataatgtgatatgttgtgggaggatacagttgtgag 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaactgagctaaattttataggatataatgtgatatgttgtgggaggatacagttgtgag 380

                                                                       
Query: 181 tcagaaagtcaatccaaggaatcagagacgggagaaatataaaacatcctctttcaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagaaagtcaatccaaggaatcagagacgggagaaatataaaacatcctctttcaatgt 440

                                                                       
Query: 241 ccttacctatctctcttcatgctgtcttctgattcttggttgggattattgtttgaaaat 300
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttacccacctctcttcatgctgtcttctgattcttggttgggattattgtttgaaaat 500

                                                                       
Query: 301 acaatataaaaaagataatattaataaaaatattcaccatcagagatgtgctctgagata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaatataaaaaagataatattaataaaaatattcaccatcagagatgtgctctgagata 560

                                                                       
Query: 361 tcacggcaggcaggcagcatgagaattttgaaggtattaatttcaatttaaccacactta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcacggcaggcaggcagcatgagaattttgaaggtattaatttcaatttaaccacactta 620

                                                                       
Query: 421 tagaggattaccactgagtggctcgggttttactcttgactgctgttttatttatttatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagaggattaccactgagtggctcgggttttactcttgactgctgttttatttatttatt 680

                                                                       
Query: 481 ttccctggcagattgagagattcagaaccattccactgagtgctctaagtacctggcata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttccctggcagattgagagattcagaaccattccactgagtgctctaagtacctggcata 740

                                                                       
Query: 541 agtttctacatagctattaattccctttctggtctaccacgcagcttttatttaggaggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtttctacatagctattaattccctttctggtctaccacgcagcttttatttaggaggg 800

                                                                       
Query: 601 gtttagaagcaaagactccacactcctggcttactattattctctatttttagagagcaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtttagaagcaaagactccacactcctggcttactattattctctatttttagagagcaa 860

                     
Query: 661 gcagcattcg 670
           ||||||||||
Sbjct: 861 gcagcattcg 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)