BAC Information

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BAC

Clone NameMSMg01-477D09
Chromosome10 (Build37)
Map Location 77,620,669 - 77,621,322
singlet/doubletsinglet
Overlap genenone
Upstream geneCol18a1, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl
Downstream geneD10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477D09.T7 (MSMg01no477_d09.b1)MSMg01-477D09.TJ (MSMg01no477_d09.g1)
ACCAG558615AG558616
length734746
length of high quality
(start - end)
653 (68 - 720)645 (74 - 718)
definitionCHROMAT_FILE: MSMg01no477_d09.b1 PHD_FILE: MSMg01no477_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:35 2005CHROMAT_FILE: MSMg01no477_d09.g1 PHD_FILE: MSMg01no477_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCATAATTTGCGGCGCTATACGACTCCTATATTTTCAGATCCGCGGAAT
TCAAATTTTTACATAGCAACATTGACTCTAGTCCCTGCAGAATGAGACAG
GTATAAACCTAACAAAATATGTACAAGATCTATGAGAAAAAAAAAAACTC
CACAAAACTCTGGTGGAAAACAAAAACAACAGCCAATCAACCCAAGCGCT
AAGGAAACGGAGTTATTCCATGCTCAAGGTCACAAAGGCTGAGGCGGCTG
TGTTGTCAAGGTGCGGATACTGCTGACACATCCGTAGATTTGGCACAATT
CCAGCCAGGAGGCTATTTCACAATGAACTCTTCCGAAGTGTGTACCGAGA
CAGCTTACGTGATGCCGAAGAAGGAAGCCGAAACAGGAGGAGCAACAGGA
CTTGATGTGGAGCCTTGCCTCCAGGGCTAGTTGAAACAGTGGTGGTGTGA
CACATAGACAGGGAGCCTTGGCAAATGCCAGTCGGCCTTGACAATGGGAC
GGAGGCAACGCAGAGAGGCAGAGGAGTCCTTCCAGAAGTGCAGCTTGTGG
ATATCCATACTAGTTATTTCATTTCGCTTCTGGATATAAACACTGGGACA
CTCTTTGAACACTTGTCATTAATTCCTTTGTTTAACTTTATATCCAGAAT
GAAGCCTGCCTCTCCCTCCTCCCAGTCCCACCCTCACAAAACCCTCCCCC
CATCTCTCCTTCCCCGTATGAAAGAGTTTATTCN
NCCCCATGCAGTGGGAGGCCTGGCGGCCGCCTGGTCAACAAGGGGGGTGA
CCTATAGATTTCCCGCGGAGTTCAGTACTGCCCCTGGTATTACACAATCT
CTTTGAGTAAAAGTTAGGTCACTGCCCTTCACAGGAATCTACCATCACCT
AGGAAGAAAGAAGTTTCTGACCGTAGGGGAAACCAGAATAGATGCTTAGA
ATTATAGCTGAGTTACACCTATTTACAGGAATTTACTATGGTTTAGGAAG
CAGATCGGGCTGTGGTTTTAGAGTATTGCATTATTCATGAGATGGTTAGC
TAGAACGGAACTCCCTTTTTAGAACCATGACTTGGGTGTGAAAGCCCTTG
CCCTAGGAGTGAAAAGTTCTCACACCTGGCTTCTAAGACTATAGCTGACC
TTAGACAGGGCTGACTCTGTCTCAGTTATTTTATTGCCCAGCTCCTGCCA
GTCTTTGCATTTTCTTTTTTTTAATTTTTTTATTAGGTATTTTCCTTGTT
TACATTTTCAATGCTATCCCAAAGGTCCCCCATACCCACCCCCCCAATCC
CCTACCCACCCACTCCCCCTTTTTGGTCCTGGCGTTCCCCTGTACTGGGG
CATCTAAAGTTGGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGAC
TAGGCCATCTTTTGATACATATGCAGCTAGAGACAAGAGCTCCGGGGTAC
TGGTTAGTTCATACTGTTGCTCCATCTATAGGGTTGCAGATCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_d09.b1 MSMg01no477_d09.b1 CHROMAT_FILE:
MSMg01no477_d09.b1 PHD_FILE: MSMg01no477_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:35 2005
         (653 letters)



>mm_chr10_77620472_77621523
          Length = 1052

 Score = 1170 bits (605), Expect = 0.0
 Identities = 643/657 (97%), Gaps = 7/657 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacattgactctagtccctgcagaatgagacaggtataaacctaacaaaatatgtacaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aacattgactctagtccctgcagaatgagacaggtataaacctaacaaaatatgtacaag 257

                                                                       
Query: 61  atctatgagaaaaaaaaaaa---ctccacaaaactctggtggaaaacaaaaacaacagcc 117
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 258 atctatgagaaaaaaaaaaaaaactccacaaaactctggtggaaaacaaaaacaacagcc 317

                                                                       
Query: 118 aatcaacccaagcgctaaggaaacggagttattccatgctcaaggtcacaaaggctgagg 177
           |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 318 aatcaacccaagcgctaaggaaactgagttattccacgctcaaggtcacaaaggctgagg 377

                                                                       
Query: 178 cggctgtgttgtcaaggtgcggatactgctgacacatccgtagatttggcacaattccag 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cggctgtgttgtcaaggtgcggatactgctgacacatccgtagatttggcacaattccag 437

                                                                       
Query: 238 ccaggaggctatttcacaatgaactcttccgaagtgtgtaccgagacagcttacgtgatg 297
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ccaggaggttatttcacaatgaactcttccgaagtgtgtaccgagacagcttacgtgatg 497

                                                                       
Query: 298 ccgaagaaggaagccgaaacaggaggagcaacaggacttgatgtggagccttgcctccag 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccgaagaaggaagccgaaacaggaggagcaacaggacttgatgtggagccttgcctccag 557

                                                                       
Query: 358 ggctagttgaaacagtggtggtgtgacacatagacagggagccttggcaaatgccagtcg 417
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtctagttgaaacagtggtggtgtgacacatagacagggagccttggcaaatgccagtcg 617

                                                                       
Query: 418 gccttgacaatgggacggaggcaacgcagagaggcagag-gagtccttccagaagtgcag 476
           ||||||||||||||||||||||||||||||  ||||| | ||||||||||||||||||||
Sbjct: 618 gccttgacaatgggacggaggcaacgcagat-ggcag-gcgagtccttccagaagtgcag 675

                                                                       
Query: 477 cttgtggatatccatactagttatttcatttcgcttctggatataaacactgggacactc 536
           |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 676 cttgtggatatccacactagttacttcatttcgcttctggatataaacactgggacactc 735

                                                                       
Query: 537 tttgaacacttgtcattaattcctttgtttaactttatatccagaatgaagcctgcctct 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tttgaacacttgtcattaattcctttgtttaactttatatccagaatgaagcctgcctct 795

                                                                    
Query: 597 ccctcctcccagtcccaccctcacaaaaccctccccccatctctccttccccgtatg 653
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 796 ccctcctcccagtcccaccctcacaaaaccctccccc-atctctccttccccgtatg 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1052
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1042
Effective search space:   670006
Effective search space used:   670006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)