BAC Information

Click to search

BAC

Clone NameMSMg01-477F19
Chromosome10 (Build37)
Map Location 128,307,060 - 128,307,766
singlet/doubletsinglet
Overlap gene1110005A23Rik
Upstream geneBC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2
Downstream geneGdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477F19.T7 (MSMg01no477_f19.b1)MSMg01-477F19.TJ (MSMg01no477_f19.g1)
ACCAG558731AG558732
length763773
length of high quality
(start - end)		712 (44 - 755)679 (72 - 750)
definitionCHROMAT_FILE: MSMg01no477_f19.b1 PHD_FILE: MSMg01no477_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:47 2005CHROMAT_FILE: MSMg01no477_f19.g1 PHD_FILE: MSMg01no477_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGGATCCGCGGAA
TTCTTGGGGTTTAAACAAAAATAATTAAAAGTCTAGCCTAGAAGAATCTC
ACAGAAGAGCATTCAAAAATGAAAACAAAAAACCTGGCATGGTGACTCAT
GGTGTCTTTGATCCCAGCAAGAGGAACTCTGAGTTGGAGATAGCTGGGTT
TATGTAGGAAGTTCCAGGACAGGTAGGGATACATAAAAAGACCCTGTCTC
AAACAAACTAAAGAACTATACCATCTGCTTTCTCCAGCACTTTTATGGAG
AACTGGCATATACTTGGGTGAGGACCTAAACACAGCTTAGTGATTTATCC
TATTTTGTTATTTCCTTTTACCATCTTTCCTAATTATGCCCAGTCAGCTG
CCCAGCAGCTGAAATCTCAGCACTCCCTGCCCTAGCTGCCGAGGTTACAG
GTGACATTGCCTACCTTACTCAGTTGCAGCCTGGCTCTTTGAAACAGCTT
AAAGAGAATGACCAGCTCCGTCCCACTCAATGTAAGCTGAAATATTCTCA
TACCCAGTTACTAGGTAGACATGAATGTCACAACTGCTTGGAAAGTATCC
AGAGCCTCTGGCAGACGACTCTACTTGTCTCCTGTCTTTCAGGTGCAGGA
GAAACAGCTCAGTGGTTACAAGCACACTGGCTGCTCTTTCAGAGGCACAG
ATTGAAACCTACATGTGGTTTACAACCAAGTGTAGCTCCCAACACCTTGA
TGACAGACATGTN

ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
ACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGTTCAAA
AACTCAGGTGACAGCAGATGTTGCCAAGGATGTGGAGAAAGGGGAACACT
CCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAG
TCTGTCGGTTCCTCTTATTTTTGGACATAGTACTACCAAAGGATCCCGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGAA
CACATGTTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATTTACTCAATGGAATACTACTCAGCTATTAAAAAAATGAATTTGTG
AAATTCCTAGGCAAATGGATGGACCTAGAGGGTATCATCCTGAGTGAAGT
AACCCAATCACAAAGGAACTCGCACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCAGAAACTTAGGATACCCGAGATATAAGATACAACTTGCCAAA
CGAATGAAATTCAAGAAGAACAAAGACCAAAGTGTGGACACTTTACCCTT
TCTTAGAAATGGGAACAAAACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_f19.b1 MSMg01no477_f19.b1 CHROMAT_FILE:
MSMg01no477_f19.b1 PHD_FILE: MSMg01no477_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:47 2005
         (712 letters)



>mm_chr10_128306856_128307967
          Length = 1112

 Score = 1338 bits (692), Expect = 0.0
 Identities = 704/708 (99%), Gaps = 1/708 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttggggtttaaacaaaaataattaaaagtctagcctagaagaatctcacagaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttggggtttaaacaaaaataattaaaagtctagcctagaagaatctcacagaag 264

                                                                       
Query: 65  agcattcaaaaatgaaaacaaaaaacctggcatggtgactcatggtgtctttgatcccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcattcaaaaatgaaaacaaaaaacctggcatggtgactcatggtgtctttgatcccag 324

                                                                       
Query: 125 caagaggaactctgagttggagatagctgggtttatgtaggaagttccaggacaggtagg 184
           ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 caaaaggaactctgagttggagattgctgggtttatgtaggaagttccaggacaggtagg 384

                                                                       
Query: 185 gatacataaaaagaccctgtctcaaacaaactaaagaactataccatctgctttctccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatacataaaaagaccctgtctcaaacaaactaaagaactataccatctgctttctccag 444

                                                                       
Query: 245 cacttttatggagaactggcatatacttgggtgaggacctaaacacagcttagtgattta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacttttatggagaactggcatatacttgggtgaggacctaaacacagcttagtgattta 504

                                                                       
Query: 305 tcctattttgttatttccttttaccatctttcctaattatgcccagtcagctgcccagca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcctattttgttatttccttttaccatctttcctaattatgcccagtcagctgcccagca 564

                                                                       
Query: 365 gctgaaatctcagcactccctgccctagctgccgaggttacaggtgacattgcctacctt 424
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctgaaacctcagcactccctgccctagctgccgaggttacaggtgacattgcctacctt 624

                                                                       
Query: 425 actcagttgcagcctggctctttgaaacagcttaaagagaatgaccagctccgtcccact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 actcagttgcagcctggctctttgaaacagcttaaagagaatgaccagctccgtcccact 684

                                                                       
Query: 485 caatgtaagctgaaatattctcatacccagttactaggtagacatgaatgtcacaactgc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caatgtaagctgaaatattctcatacccagttactaggtagacatgaatgtcacaactgc 744

                                                                       
Query: 545 ttggaaagtatccagagcctctggcagacgactctacttgtctcctgtctttcaggtgca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttggaaagtatccagagcctctggcagacgactctacttgtctcctgtctttcaggtgca 804

                                                                       
Query: 605 ggagaaacagctcagtggttacaagcacactggctgctctttcagaggcacagattgaaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 805 ggagaaacagctcagtggttacaagcacactggctgctctttcagaggcacag-ttgaaa 863

                                                           
Query: 665 cctacatgtggtttacaaccaagtgtagctcccaacaccttgatgaca 712
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 cctacatgtggtttacaaccaagtgtagctcccaacaccttgatgaca 911


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space:   773604
Effective search space used:   773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |