BAC Information

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BAC

Clone NameMSMg01-477K04
Chromosome10 (Build37)
Map Location 129,797,077 - 129,797,459
singlet/doubletsinglet
Overlap gene5830405N20Rik
Upstream geneOlfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4
Downstream geneEG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477K04.T7 (MSMg01no477_k04.b1)MSMg01-477K04.TJ (MSMg01no477_k04.g1)
ACCAG558940AG558941
length720821
length of high quality
(start - end)
580 (47 - 626)---
definitionCHROMAT_FILE: MSMg01no477_k04.b1 PHD_FILE: MSMg01no477_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:07 2005CHROMAT_FILE: MSMg01no477_k04.g1 PHD_FILE: MSMg01no477_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCC
GCGGAATTCATAATATTTGTCAAGGTTTGAGTAAGAATGGCCCCCATAGA
CTCATATATATGAATACTTAGTCACTAGAGAGTATTGCTATTTGAAAGGA
TTAGAATGAATAGGTGTGGCCTTGTTGGAGGAAGCATGCCAGTGGAGGTG
AGCTTTGAGTTTTCAAAATCCCATGCCAGGCCTAGGCTCTCTTTCTTTCA
GCCTGTGGAACAGGATTTAGCTCTAGACAACTATTTCAGCACCATGCGTG
CTGCCATGCTCTCCACCAAGAGGACAATGGACTAAACCTCTGAAACTGTA
AGCAAGCTCCCAATTAACATTTTTTTTTTTTAAATAAGAGTTGCTTTGGT
CATGGTGTTATGGTGTTTTTTCACAGCTACAGAACAGTGACTAGAGCAAT
ACTTAATAGTATTGTAGCTTTGAAAAGAGCTGTTAATATTTGAACCTAAT
TTCTGTGTCTGGAGGCATGGGGAAGTATATTCCAGTTCTGTTTATAAAAA
AAAATTAGCATAGAGCTTTGAACCGTTTCTACAGCAGAAAACAAATCTAA
ATGAAGATGAAAGCTCTTTGCAGGTGAAAAGCAATACAGAGCAAAGAATA
TGCCTGCATTGTCAGCTCCTGGCTGTACACTGTTGTAGATCTGATTTTTG
GCATGTTCTTTGGAGTTTGT
TATTACCGATGAAGTGGTAGGCTGGNGNCGCCGGTCCTCACCGCTAGGTG
AACNATAGAATGCAAGAGCAGAGGTGATCTTTCAAAACTTTTATCATGAA
TGGGGTGGTTTNGNNGNNAATTTTTTTTTTTTTTGGGCCCTCCCCCCCCC
ATCTAAATACTTAAACCCCTTTTCTTGTGCGCGGGGCGAAGGAGANGGAC
CTTTATATTTTTTCCCTGGGCAATTCCTAAAACANAGGGAATGGGAATCC
ATTGGGTGGGGGGTTTTTTTTTTTTTGGGGATCCCATTTTTTGTGGAAAG
GATTTTTTTTGGGGTTCCTTTTAAATTAATTAAAAGGGGGGGAATATTAA
ACAAATTTGGAAAGGGGGAATTTTTTCCCGTAATAAAATTTAAAAAAAAC
CCCAATTTCCCCCCGGGGGAACCCCCCCGGGGGGGAAAAATAAAAAAAAC
TCTAAATTTTTTTGTGTTTCCCGGGGGGAAGGGGGGAAGAAAAGAAAAGG
GGCGGCTTTCAAATAAAAATAAAAGTGGACCCCCCCCGGGGGGAGATAAT
TTTGGGTGTTATTTTTCCGCCCGACAAAGAAAGAATTCTCTTCTTTTTCT
GCGCGGGGGGGGGGAGAATAGCATTTTTTTTTGTTTTTTTTTTTTTTTAC
CGAAAACAAAGAAGAGCCCAATTGCAATCATATGAACTTTGAAATTTAAT
TTAAGCATTGCATTTATTATAAACATTTTTTTTCCCCCACTTATTTCCGG
TCAGTGAGGAACAGGGCTCTTTTGTTATTATTGGAAAGGGCGGTGAAAGA
CTACATCGTATTTTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_k04.b1 MSMg01no477_k04.b1 CHROMAT_FILE:
MSMg01no477_k04.b1 PHD_FILE: MSMg01no477_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:07 2005
         (580 letters)



>mm_chr10_129796480_129797459
          Length = 980

 Score =  714 bits (369), Expect = 0.0
 Identities = 377/383 (98%), Gaps = 6/383 (1%)
 Strand = Plus / Minus

                                                                       
Query: 204 agcctgtggaacaggatttagctctagacaactatttcagcaccatgcgtgctgccatgc 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 agcctgtggaacaggatttagctctagacaactatttcagcaccatgcgtgctgccatgc 921

                                                                       
Query: 264 tctccaccaagaggacaatggactaaacctctgaaactgtaagcaagctcccaattaaca 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 tctccaccaagaggacaatggactaaacctctgaaactgtaagcaagctcccaattaaca 861

                                                                       
Query: 324 ------ttttttttttttaaataagagttgctttggtcatggtgttatggtgttttttca 377
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tttgttttttttttttttaaataagagttgctttggtcatggtgttatggtgttttttca 801

                                                                       
Query: 378 cagctacagaacagtgactagagcaatacttaatagtattgtagctttgaaaagagctgt 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cagctacagaacagtgactagagcaatacttaatagtattgtagctttgaaaagagctgt 741

                                                                       
Query: 438 taatatttgaacctaatttctgtgtctggaggcatggggaagtatattccagttctgttt 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 taatatttgaacctaatttctgtgtctggaggcatggggaagtatattccagttctgttt 681

                                                                       
Query: 498 ataaaaaaaaattagcatagagctttgaaccgtttctacagcagaaaacaaatctaaatg 557
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ataaaaaaaaattagcatagagctttgaaccgtttctacagcagaaaacaaatctaaatg 621

                                  
Query: 558 aagatgaaagctctttgcaggtg 580
           |||||||||||||||||||||||
Sbjct: 620 aagatgaaagctctttgcaggtg 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)