BAC Information

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BAC

Clone NameMSMg01-477O12
Chromosome10 (Build37)
Map Location 113,450,029 - 113,450,458
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042655, LOC100042666
Downstream geneTrhde, 4930473D10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477O12.T7 (MSMg01no477_o12.b1)MSMg01-477O12.TJ (MSMg01no477_o12.g1)
ACCAG559147AG559148
length741754
length of high quality
(start - end)
---431 (324 - 754)
definitionCHROMAT_FILE: MSMg01no477_o12.b1 PHD_FILE: MSMg01no477_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:29 2005CHROMAT_FILE: MSMg01no477_o12.g1 PHD_FILE: MSMg01no477_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTAACACTACTTGGACCATCACATATGTAATATCCCCCAAGGCG
AAATTTTTTAACCTAAAATGGAAATAAAACTGGAATTCCTTTGGATTGGT
TCCGGCAATTTACCCAAGGTTATTTAAAATCCATTTATGGGCCTAGGGCA
AACTGAATTAAGGACCCGGGTATATCAAATTAAACTACTTTCAGAAATAA
CTTCCAAAGCCGGGTTTGAGGATCATCTCTAAGGTTGGCCCCCTGAATTG
AATACAATTTAATGCACCCTATATACCATCCAAAATGGAAAAAAACGAAA
GGAAGGGTTTCCATGTAAGTGCATCCTTTACTTTTCAAAATCCATCTTCA
TGAACTTATGAAGAAGATTACCCTGGTTTCTCCACTCAAATGGACCCATC
AAGGTGATGGTGAATCACCTTCAACCTAAACTTTTGCTCTTTGTCACTTA
AAGCATACAAATGCTTGTGTTAATATAAAGCTAAGTGAGCTTTATTTTAT
TTAATTTTATTTTATTCTTAAAGCTCACTTCTTANGACTCATGGAAATTC
CAGATATTGAAGTTATTCTTAACTCTTCTGGTTTTCTTCCTCTCATTTTT
AAAGCCACAGTTTTCTGTGTCCTGCAACAGACAAGGAGCCCTTGGATTAA
CACATGTATCAGACCTTCTTTCTACATTTCTCTCTACCATG
NCCGATTAXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAAATTTAGGTG
AACTATAGAATGCCACAAAAGAATTCTTGCTGGTGAGATACTAGCTTGGG
ATATTTGTAAGATGATATTTTAATGTTCTTTTCCTTCAGATATCTAAGTA
TGTTGTTTACAGCCACCCATCTTCATAAAGGAATAAGTAACCTGTATACT
TAGACCCACTGAAACACTTTAAAAATCCTTAAAAGCACAAGCAGTTCCAC
TAGCTTCAATAATTTCTTGTCTTCATTATTTAGAAGTAGACATTATTTTA
AATGAATAGGCAACATTCATTTTTTAAATCTGAATATGTTTCCTTGACCA
TATACCACCACGGTATGTTTCATTTACAGACTTAAAGTAAACAAGATTCC
TTTATACTCCACATTCTTGGCACATAAAAATACCCCGTCCTGTTCTAAAC
ATGTTTAGTAACTCAAACAATGCAATGGGCATCTTTCTAAAGCCCCACTT
TGGTAAGTTTAATTTCTGTATCTAAAAACACTGGCAAACGCTAAAAGAAG
AGGGATTCCAATAAAAACAAATCAACAAATCTTTTCACCAAAGATGGACA
GCTACTGTCAAAGGAATACCTAGAATGCACATTTGTAGCTTTACATGGTG
ATCACTATTAACATAAATGCTGGCAATATAACAAAGCATTGCCTTGGTGA
CTTCAAAAAGAATTGGAATAATTACCAAAAAGGAATACACAAGCCTGAAC
TGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_o12.g1 MSMg01no477_o12.g1 CHROMAT_FILE:
MSMg01no477_o12.g1 PHD_FILE: MSMg01no477_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:29 2005
         (431 letters)



>mm_chr10_113449828_113450658
          Length = 831

 Score =  770 bits (398), Expect = 0.0
 Identities = 422/430 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   taaatctgaatatgtttccttgaccatataccaccacggtatgtttcatttacagactta 61
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 202 taaatctgaatatgtttccttgaccatataccaccatgctatgtttcatttacagactta 261

                                                                       
Query: 62  aagtaaacaagattcctttatactccacattcttggcacataaaaataccccgtcctgtt 121
           ||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct: 262 aagtaaacaagattcctttatactccatatccttggcacataaaaataccctgtcctgtt 321

                                                                       
Query: 122 ctaaacatgtttagtaactcaaacaatgcaatgggcatctttctaaagccccactttggt 181
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 322 ctaaacatgtttagtaactcaaacaatgcaatgggaatctttctaaagccccactttggt 381

                                                                       
Query: 182 aagtttaatttctgtatctaaaaacactggcaaacgctaaaagaagagggattccaataa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 382 aagtttaatttctgtatctaaaaacactggcaaacgctaaaagaagaggaattccaataa 441

                                                                       
Query: 242 aaacaaatcaacaaatcttttcaccaaagatggacagctactgtcaaaggaatacctaga 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaacaaatcaacaaatcttttcaccaaagatggacagctactgtcaaaggaatacctaga 501

                                                                       
Query: 302 atgcacatttgtagctttacatggtgatcactattaacataaatgctggcaatataacaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atgcacatttgtagctttacatggtgatcactattaacataaatgctggcaatataacaa 561

                                                                       
Query: 362 agcattgccttggtgacttcaaaaagaattggaataattaccaaaaaggaatacacaagc 421
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 562 agcattgccttggtgacttcaaaaagaattggaataattaccaagaaggaatacacaagc 621

                     
Query: 422 ctgaactgcc 431
           ||||||||||
Sbjct: 622 ctgaactgcc 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)