BAC Information

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BAC

Clone NameMSMg01-478G13
Chromosome10 (Build37)
Map Location 88,544,850 - 88,545,264
singlet/doubletsinglet
Overlap geneTmem16d
Upstream genePmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8
Downstream geneGas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478G13.T7 (MSMg01no478_g13.b1)MSMg01-478G13.TJ (MSMg01no478_g13.g1)
ACCAG559532AG559533
length754757
length of high quality
(start - end)
54 (240 - 293)408 (73 - 480)
definitionCHROMAT_FILE: MSMg01no478_g13.b1 PHD_FILE: MSMg01no478_g13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:08 2005CHROMAT_FILE: MSMg01no478_g13.g1 PHD_FILE: MSMg01no478_g13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGCGCAGANGAGGCGGTTTCGGACCCGANNNGNGGAANNNAGAATGG
CNGGACCCGCCGGGANNNAGGAGAGCNCCACAGAGNAACGCACCAGCCGG
GTTCACCCCGCCAAGACGGAGANGGGGGNAGGNCCCAGGCGGCAGGACCA
GGGCAACCGGNCGGAGAACACGCGGAGCCGCCAGAAGGGACGGAAGGAGA
NAGNNGAGANCCAAACNNGGCGCGANCAAAGCATTTTTGTGTTTAAGTTT
TGTATCTTCGATGATGTCACCCCCAGCCCACGTGCTTCGAGGGCACCCTT
TTTTTTTTTGCAGCCACCAGACNGNGCAGCNCAGACAGAGACCTCTTGCC
ACCCCCCGCGCAGNACCCACAAGCCANAAGAGGGGGGACNGGGNGNACCC
ANCCAAATGTGCTTTCTCAGATTGCTCACTGGTATTTGGAGCTGAGGGCA
CTGTGATCTCCACTGAGCAGCCAACATTTCATCCACTGAGTGGGCCTCCA
TAGATTTCCCACTGGTCATTGCAGCTAGGGCCTGATAAGTAAAAGAATCT
AAGAACCACTCTTCCCTCACTGGTGGTGAGTCTGCCCTCCATCCATAGCT
GGAAGTCCACACCTTTTCAATCTTCCCAAGGTGTTTTTTTTTTTTTTTTG
GATACCTCCGAAACTCCTCTGATGGAGGAAATCTATTTTAAGTCTCCCAT
CTAGGGTGTGTTCGGGAAAACGGCTGAATAGACTGGCTTTCTTTAACCCT
ATCG
GTGAGGCCAGGNGGNCGCCAGTACGTATTCAGTAGGNGAANNNAANGATT
ACAAACAAAGGGGCTCTGNNCCACATTTCCAGCATCTAGTACCTAATTTG
TGGGCTAGACGAACTCATAAATCTTATACATGTACAAGAGGAGTCAGGTA
GGAGGAAAGATGGCCACAAAAGAAGGAGGAGAAGGAGGAGGAGGAAACAA
GAAAAGAAAGAGGGGAGGAAGGAGGAGGATGGGAAGATGTGAAAGAAGAG
GAGGAGGAGGAGGAACCAGTCTGGGTAAAAATGAGAAACACTGACTTTTG
ACTGTTTTTTTTTCAAACAATGAAAGGNGGGTGGGTAATAAAGACATATA
TGATGGCAAAAGGAAACAGAATCTCAAACTTCAGTTAGATGTTGATATCA
CATTCATGATACTCTTAAACCTCTTAAACTCTCTGTGGTCATCTGGTTCA
TATTTAAACAAGCTGGAAATAAGGACACCCAAGGCAGCAGCTCTGATGAC
TAGAAAAATCTTTAAAATAAGCTATAATAGGCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCGCTGCTCTCGAGCTCTGTGAGGACGTTGGC
GGCTATTTACCCTCCTGTCCACTTTTCTTTCCTTATTCCCCTTTTTTTTT
TTTTCCCCTTCTGTTCTTCTTTTGTAAATATTAGTTCTGCCTTTTTTTGC
GTGTCCAAATTCTTATATTGATTTGTTCAACATATTTTTTATGTTTTTTT
ATCTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_g13.g1 MSMg01no478_g13.g1 CHROMAT_FILE:
MSMg01no478_g13.g1 PHD_FILE: MSMg01no478_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:08 2005
         (408 letters)



>mm_chr10_88544458_88545265
          Length = 808

 Score =  638 bits (330), Expect = 0.0
 Identities = 391/415 (94%), Gaps = 7/415 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatttccagcatctagtacctaatttgtgggctagacgaactcataaatcttatacatg 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 acattttcagcatctagtacctaatttgtgggctagacgaactcataaatcttatacatg 748

                                                                       
Query: 61  tacaagaggagtcaggtaggaggaaagatggccacaaaagaaggaggaga------agga 114
           |||||||||||||||||||||||||||||||||||| |||||||||||||      ||||
Sbjct: 747 tacaagaggagtcaggtaggaggaaagatggccacagaagaaggaggagaaggaggagga 688

                                                                       
Query: 115 ggaggaggaaacaagaaaagaaagagg-ggaggaaggaggaggatgggaagatgtgaaag 173
           ||||||||||||||| ||||||||||| ||||| |||||||||||||||||| | |||||
Sbjct: 687 ggaggaggaaacaaggaaagaaagaggaggagggaggaggaggatgggaagaggagaaag 628

                                                                       
Query: 174 aagaggaggaggaggaggaaccagtctgggtaaaaatgagaaacactgacttttgactgt 233
           ||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 627 aagaggaagaggaagaggaaccagtctgggtaaaaatgagagacactgacttttgactga 568

                                                                       
Query: 234 ttttttttcaaacaatgaaaggngggtgggtaataaagacatatatgatggcaaaaggaa 293
             | |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 567 aatattttcaaacaatgaaaggtgggtgggtaataaagacataaatgatggcaaaaggaa 508

                                                                       
Query: 294 acagaatctcaaacttcagttagatgttgatatcacattcatgatactcttaaacctctt 353
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acagaatctcaaacctcagttagatgttgatatcacattcatgatactcttaaacctctt 448

                                                                  
Query: 354 aaactctctgtggtcatctggttcatatttaaacaagctggaaataaggacaccc 408
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 447 aaactctctgtggtcatctggttcatatttaaacatgctggaaataaggacaccc 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)