BAC Information

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BAC

Clone NameMSMg01-478H02
Chromosome10 (Build37)
Map Location 34,945,772 - 34,946,367
singlet/doubletsinglet
Overlap genenone
Upstream geneTspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
Downstream geneLOC100041585, LOC667860
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478H02.T7 (MSMg01no478_h02.b1)MSMg01-478H02.TJ (MSMg01no478_h02.g1)
ACCAG559558AG559559
length734734
length of high quality
(start - end)
662 (64 - 725)612 (65 - 676)
definitionCHROMAT_FILE: MSMg01no478_h02.b1 PHD_FILE: MSMg01no478_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:10 2005CHROMAT_FILE: MSMg01no478_h02.g1 PHD_FILE: MSMg01no478_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTT
TTGCTTACATTTCATTCCATTATTTTTGGCATACCACCACGTGTATTATT
CATTCAAATGAAATTTTAAAACATGTTCAGTGTCTGTTAAGGTTACCTTG
GAAATAACTTTGTGTCTCTTTCTATTTTTTTTTCTTTTGATCCTTGACCA
ACTTTTATTTATTTTTATTAATTATTTTATTTATTTACATTTCAATTGTT
GTCCCTGTTTTCCCCTGTGGAAAGCCCCACACCATGCTCCCTCCCCCTTG
CCACTAATATGTTACTCCCCACCCACCCAGCAAAAGTGACTCTTTCTTAT
ATATAGTTTGATCTGCATATTACTTTTCCCAAATGGTACTACATTGACTT
GGCAGGTATTTCAACACACTAGGTTTCAAGGGTCATAGACTCCTTGAAAA
TTCTCTTTCTAGTTAATCAACATCTGCTCAAAAATAGAGGAAATCAGTGA
AGGGTTTTCCTGGTACAAGGACATCTTGGCACTTAAGAACCAAGTAATAC
TGCAAAGTCAAACCACATAACACACCTCACAGAGGAGATTTTTTTGAGAA
GAACAGAATGGCAGATGTCTCTGAAGGGGAAGACAGACAATAGAGAGTTG
CATGGAGGAGAGGGCTTTTGTAGGTTTCTGGTGCATGAACAGTGAGATAA
TGAAAAAGTACAGTGATACCATGCTTGAAGTATT
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTAACTGAGGAATACTGAATGGCTGAGATGCACCTG
AAAAAATGTTCTACATCCTTAATCATCAGGAAAATGCAAATCAAAACAAC
CCAGAGATTCCACCTCACACCAGTTAGAATGGCTAAGATCAAATATTCAG
GTGACAGCAGATGCAGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCAT
TTTTGGTGTAATTGCAATCTAGTTCAACCACTCTGGAAAATCAGCCTGGC
AGTTCCTCATAAAATTGGACATAGTGTTACTGGGTGACCCAGCAATACCT
TTCCTGGGCATATACCCAAAATATGTTCCAACTTGTCATAAGGACACATG
CTCTACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCCAGATGTCCCTCCACAGAGGAATGGATTCAAAAAATGTGGTACATT
CATACCATGGACTACTACTCAGTAATTAAAAAACAATGAATTTATGAAAT
TCTTAGGCAAATGGATGGATTTGGGGGATATCATCTTGAGTGACGTAATC
CAATCACAAAGGAACACGTATGATATGCACTCACTGATAAGTGGGTATTA
GCCCAGAAACCTAGAATACCCAAGATACAATTTGCAAAACACATTANACT
CAAGAAAAAGGAAGACAAAGTGTGGATACTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_h02.b1 MSMg01no478_h02.b1 CHROMAT_FILE:
MSMg01no478_h02.b1 PHD_FILE: MSMg01no478_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:10 2005
         (662 letters)



>mm_chr10_34945306_34946367
          Length = 1062

 Score = 1100 bits (569), Expect = 0.0
 Identities = 590/597 (98%), Gaps = 2/597 (0%)
 Strand = Plus / Minus

                                                                        
Query: 67   gtgtctgttaaggttaccttggaaataactttgtgtctctttctatttttttttcttttg 126
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 gtgtctgttaaggttaccttggaaataactttgtgtctctttctatttttttttcttttg 1003

                                                                        
Query: 127  atccttgaccaacttttatttatttttattaattattttatttatttacatttcaattgt 186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 atccttgaccaacttttatttatttttattaattattttatttatttacatttcaattgt 943

                                                                        
Query: 187  tgtccctgttttcccctgtggaaagccccacaccatgctccctcccccttgccactaata 246
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 942  tgtccctgttttcccctgtggaaagccccacaccatgctccctctcccttgccactaaga 883

                                                                        
Query: 247  tgttactccccacccacccagcaaaagtgactctttcttatatatagtttgatctgcata 306
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882  ggttactccccacccacccagcaaaagtgactctttcttatatatagtttgatctgcata 823

                                                                        
Query: 307  ttacttttcccaaatggtactacattgacttggcaggtatttcaacacactaggtttcaa 366
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 822  ttacttttcccaaatggtactacattgacttggcagatatttcaacacactaggtttcaa 763

                                                                        
Query: 367  gggtcatagactccttgaaaattctctttctagttaatcaacatctgctcaaaaatagag 426
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762  gggtcatagactccttgaaaattctctttctagttaatcaacatctgctcaaaaatagag 703

                                                                        
Query: 427  gaaatcagtgaagggttttcctggtacaaggacatcttggcacttaagaaccaagtaat- 485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 702  gaaatcagtgaagggttttcctggtacaaggacatcttggcacttaagaaccaagtaata 643

                                                                        
Query: 486  actgcaaagtcaaaccacataacacacctcacagaggagatttttttgagaagaacagaa 545
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 642  actgcaaagtcaaaccacataacacacctcacagaggaga-ttttttgagaagaacagaa 584

                                                                        
Query: 546  tggcagatgtctctgaaggggaagacagacaatagagagttgcatggaggagagggcttt 605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583  tggcagatgtctctgaaggggaagacagacaatagagagttgcatggaggagagggcttt 524

                                                                     
Query: 606  tgtaggtttctggtgcatgaacagtgagataatgaaaaagtacagtgataccatgct 662
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 523  tgtaggtttctggtgcatggacagtgagataatgaaaaagtacagtgataccatgct 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)