BAC Information

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BAC

Clone NameMSMg01-478I18
Chromosome10 (Build37)
Map Location 99,564,104 - 99,564,473
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl, LOC100042246, Kitl
Downstream geneLOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478I18.T7 (MSMg01no478_i18.b1)MSMg01-478I18.TJ (MSMg01no478_i18.g1)
ACCAG559637AG559638
length737741
length of high quality
(start - end)
703 (35 - 737)677 (65 - 741)
definitionCHROMAT_FILE: MSMg01no478_i18.b1 PHD_FILE: MSMg01no478_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:17 2005CHROMAT_FILE: MSMg01no478_i18.g1 PHD_FILE: MSMg01no478_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATCTT
TCTCATTAGTAGATCTCTATTACAAAGTAGTTCATTAAGCAAAACTCCTT
GTCTACTATGGCATTTTTAATGTTGTGATGAAATTTCTAGAGAACCAGGC
ACGGCGTTTACAACTACAGCTCCTGGGACTTGAAGTTAGAGGATTAGGTG
TGTAAAGCCAGTCTAGGCTACTTAGCGAGTTCAAGACTATCTTGAGCTAC
AGGATGGAGCATTGTCTCAACAAGTCAAGGGCTGAGCATCTTTCTCAGTG
TTAGAGGACTTGCCTGGGAGGAGCAAAGCCCTAAGATTGATCCCTGGTAC
TTGTAGGGTGAGTGTCCTGATAGAAATGTGCGTTGTCTCATATCCTACAT
AATGGCCTTGATTTCATCTTTTGGCACACAAAGTGCCAAATAGTTAGTCT
TTTGTGTTTTGCTAAGAGTGATAATGTGGAATGCATGGTATTTTTGTAAT
TCACTTTTTTAGAGCATTTACAGTTTTTATGTTGATGAACATTTGCTTGC
ATATATGTTCAGTGTGCGTTTGCCAGGCACCCTCAGAGGCCAGAAGAGAT
CAGTGGGCTCCCTGGAACCGGAGTTAGAGATGTTTGTGAGCTGTCCTGAG
GATGCTGGGAAGGAAACCTAAGTCCTCTGCAAAAGCAACTAGTGTTCTTC
AACCACTGATTCTTATCTCTGGCACCTATTTAATTCA
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACATATTCACAAGTTGGAGCCTGGGGTTTGCTCTCC
CCTGGCACCCCAAGATACCTTTCTTATTAGAGTGTAAGATTTCTCTTAAA
TATATTTATCTATTCCTACCCTATTAGAATCTTTGAGTTCTTTTACACCC
TTTTCCTCAGCAAACTGAATGTTTTTCATGTCTTTCTGGAAATTCTTTCA
CTGTAGCTCTAAAAACAATAACAAGTAACCATGTCACAGCCTGGATGCTA
TGTGGTCTAAAAACTTCCTCTGCTAAATGATTTCTTCCATTCTTGCATTC
AGCCTCTTAAATTCTCAGGACACCAGCAGAAAGCAGCAAGACTCTTTGTC
AGAAAATAACAGAGCCCTGTTTCTACTTGTTCTCCTCTGAAACCTCATGG
ACTAGGCTGTAGTTCTCTCTCAGACCTCGGGGCATTCCAAACTCTCATCT
GATTAGTCCACTAAACTCAGCTTCCAGCACAGTTTAGGCTTCTGCAGCCC
ATCACTCCATATCCTTCCACAAATCGGGTGAGGAAGCCTAAGGACCACTT
GGTCATGTTTGCCATGAAGACGCTTCCTTTTAGTATCCCTGTCTTGCATT
AGGAACTTTTGCAGCTGTGACTTAGGCAGGGTTTACCAAGGCTCCCCAGG
AGTGTGAAGTGGCTGTTCCCAGTCTCCTCAGTTGGGATACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_i18.g1 MSMg01no478_i18.g1 CHROMAT_FILE:
MSMg01no478_i18.g1 PHD_FILE: MSMg01no478_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:17 2005
         (677 letters)



>mm_chr10_99563397_99564473
          Length = 1077

 Score =  716 bits (370), Expect = 0.0
 Identities = 370/370 (100%)
 Strand = Plus / Minus

                                                                        
Query: 307  caccagcagaaagcagcaagactctttgtcagaaaataacagagccctgtttctacttgt 366
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 caccagcagaaagcagcaagactctttgtcagaaaataacagagccctgtttctacttgt 1018

                                                                        
Query: 367  tctcctctgaaacctcatggactaggctgtagttctctctcagacctcggggcattccaa 426
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 tctcctctgaaacctcatggactaggctgtagttctctctcagacctcggggcattccaa 958

                                                                        
Query: 427  actctcatctgattagtccactaaactcagcttccagcacagtttaggcttctgcagccc 486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957  actctcatctgattagtccactaaactcagcttccagcacagtttaggcttctgcagccc 898

                                                                        
Query: 487  atcactccatatccttccacaaatcgggtgaggaagcctaaggaccacttggtcatgttt 546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897  atcactccatatccttccacaaatcgggtgaggaagcctaaggaccacttggtcatgttt 838

                                                                        
Query: 547  gccatgaagacgcttccttttagtatccctgtcttgcattaggaacttttgcagctgtga 606
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837  gccatgaagacgcttccttttagtatccctgtcttgcattaggaacttttgcagctgtga 778

                                                                        
Query: 607  cttaggcagggtttaccaaggctccccaggagtgtgaagtggctgttcccagtctcctca 666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777  cttaggcagggtttaccaaggctccccaggagtgtgaagtggctgttcccagtctcctca 718

                      
Query: 667  gttgggatac 676
            ||||||||||
Sbjct: 717  gttgggatac 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)