BAC Information

Click to search

BAC

Clone NameMSMg01-478L20
Chromosome10 (Build37)
Map Location 23,995,213 - 23,995,752
singlet/doubletsinglet
Overlap geneMoxd1
Upstream geneEya4, Rps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7
Downstream geneLOC628537, Ctgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399, Akap7, LOC665800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478L20.T7 (MSMg01no478_l20.b1)MSMg01-478L20.TJ (MSMg01no478_l20.g1)
ACCAG559784AG559785
length719716
length of high quality
(start - end)
313 (317 - 629)549 (68 - 616)
definitionCHROMAT_FILE: MSMg01no478_l20.b1 PHD_FILE: MSMg01no478_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:31 2005CHROMAT_FILE: MSMg01no478_l20.g1 PHD_FILE: MSMg01no478_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCCGCTATAGGAATCACTTTTCGTACGGGGGNGNGGAATTCTG
ACTTACCACATCTGGTGCTTGGTTTTTTTTTTTTGTTTTTTTTTTTGGTT
GGGTTAATGACCGCTTCTAATGACTGCTTCTTTAGGGGTTATGGGGCAGT
TTAGATGATTTATCTGATCCTGATTTAACTTTGGCACCTGGTATCTGTCT
AGAAAATTTTGTTTCTATGCCTATTATCCTTAGGTTTGGTCTTCTCATTG
TGTCCTGGATTTTCTGGATGTTTTGTGTTAGGAGCTTTTTTCTTTTTGGG
TTTTTTACTACTCTCCTACTGTTGTGTCAATGTTTTCTATGGTATCTTCT
TCTCCTGAGATTCTCTCTTCTATCTCTTGTAGTTTGTTGGTGATGCTTGC
ATCTGTGACTCCTGATCTCTTTCCTAGGTTTTCTAACTCCAGGGTTGTCT
CCCTTTGTGATTTCTTTATTGTTTCTATTTCCATTTTTATATCCTGAATG
GTTTTGTTCATTTCCTTGGCCTGTTTGATTGTGTTTTCCTGCGATTCTTT
AAGGGATTTTTGTGTTTCCTCATTAATGGCTTCTAGCTGTTTACCTGTGT
TCATCTCTAGTTCTTTAAAGGAGTTATTTATGTCCTTCTTAAAGCCCTCT
ATCATCATCATTACAAGTGATTTTAGATCCGAATCTTGCTTTTCCAGTGT
GATGGTGTATCCATGACTT
TGTGTGAGGCCTGGNGGCCGCCTGTTTCAAGAAGGGXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCATGAGAATCATTGTCCTATACGCACCACAAC
TGACGAGCTCAGGGATGAGTACCCAGCCTGTCAAGCTGTCCTTGGGTTTC
TTAAACTCTAAGAAATATTTCCCTGCCCCTGAAAGGCCATAGTAGGAGGT
CAGCAGATGTCACAAGTGACATGTTGATGACCTGGTACAGTGGGCTCCAC
AAAGACAGCACAGAGAGGACCCAGACCCAGGGGAGCTTTTCCATCCAAGG
TTTCTCTATCTGTCCCTTCTTGCCATTCTGAGATTTAGTCATCGTTTCCT
CCCAAGCTGGTTCACCTTCTTCCCCCGCCACCTTCTTTCTGGCGATCGGA
AGCTATCAAACAAAACCCCAGGTCACCAGTTCATCTGTGTTTCCTGAACA
CACACCACCTGAAGTTTGCCTTTTTTCTTATCTCAGAAACATTGCCACCT
AAAGTTGTTCTTATACTGTTTTAACTGGACCTGGGAAGGGTTTCAGTCAT
TTCAGTAAATTCCCTGTTAAGAGCCATATGTGTGTGTAGGGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTCATACCCCCCTCCTTTTTTTTTTCATCCTT
TATTTTCCTGCTATCTTTTACATTTTTTTTTTATTTTTCCCTTGCCTTAT
TTTTTATTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_l20.g1 MSMg01no478_l20.g1 CHROMAT_FILE:
MSMg01no478_l20.g1 PHD_FILE: MSMg01no478_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:31 2005
         (549 letters)



>mm_chr10_23995042_23995990
          Length = 949

 Score =  967 bits (500), Expect = 0.0
 Identities = 530/540 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgagaatcattgtcctatacgcaccacaactgacgagctcagggatgagtacccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tcatgagaatcattgtcctatacgcaccacaactgacgagctcagggatgagtacccagc 652

                                                                       
Query: 61  ctgtcaagctgtccttgggtttcttaaactctaagaaatatttccctgcccctgaaaggc 120
           || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 651 ctatcaagctgtccttgggtttcttaaactctaagaaatatttcactgcccctgaaaggc 592

                                                                       
Query: 121 catagtaggaggtcagcagatgtcacaagtgacatgttgatgacctggtacagtgggctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 catagtaggaggtcagcagatgtcacaagtgacatgttgatgacctggtacagtgggctc 532

                                                                       
Query: 181 cacaaagacagcacagagaggacccagacccaggggagcttttccatccaaggtttctct 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cacaaagacagcacagagaagacccagacccaggggagcttttccatccaaggtttctct 472

                                                                       
Query: 241 atctgtcccttcttgccattctgagatttagtcatcgtttcctcccaagctggttcacct 300
           ||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 471 atcagtcctttcttgccattctgagatttagtcatcttttcctcccaagctggttcacct 412

                                                                       
Query: 301 tcttcccccgccaccttctttctggcgatcggaagctatcaaacaaaaccccaggtcacc 360
           ||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||
Sbjct: 411 tcttcccccgccaccttctttctggcgatagaaagctatcaaacaaaaccacaggtcacc 352

                                                                       
Query: 361 agttcatctgtgtttcctgaacacacaccacctgaagtttgccttttttcttatctcaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agttcatctgtgtttcctgaacacacaccacctgaagtttgccttttttcttatctcaga 292

                                                                       
Query: 421 aacattgccacctaaagttgttcttatactgttttaactggacctgggaagggtttcagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aacattgccacctaaagttgttcttatactgttttaactggacctgggaagggtttcagt 232

                                                                       
Query: 481 catttcagtaaattccctgttaagagccatatgtgtgtgtagggtgtgtgtgtgtgtgtg 540
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 catttcagtaaatttcctgttaagagccatatgtgtgtgtagggtgtgtgtgtgtgtgtg 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)