BAC Information

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BAC

Clone NameMSMg01-478O20
Chromosome10 (Build37)
Map Location 113,548,481 - 113,549,089
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042655, LOC100042666
Downstream geneTrhde, 4930473D10Rik, Tph2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478O20.T7 (MSMg01no478_o20.b1)MSMg01-478O20.TJ (MSMg01no478_o20.g1)
ACCAG559927AG559928
length742743
length of high quality
(start - end)
354 (317 - 670)609 (64 - 672)
definitionCHROMAT_FILE: MSMg01no478_o20.b1 PHD_FILE: MSMg01no478_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:45 2005CHROMAT_FILE: MSMg01no478_o20.g1 PHD_FILE: MSMg01no478_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAGGCGCGGAATTCTTTGT
TTACCACTGACACCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGCTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCCTTTTGTCCTAT
TGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTATGTCTTCT
GAGATCTTCTTTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAA
ACAACACTCTTTTTCTTTAGTCAACAAATAATATAAAATATCTCGGCGTG
ACTCTAACTAAGGAAGTGAAAGATCTGTATGATTAAAAACTTCAAGTCTC
TGAAGAAAGAAGTTAAAGATATGTGAAGTTGGAAATATCTCCCATTCTCA
TGGATTGTCTTTTTATTGAGGAATTGAGTCCATTGATATTAAGAGATATT
AAGGAAAAGTAATTGTTACTTGCTATTATTTTTGTTGTTAGAGTTGGCAT
TCTATTCTTGTGGCTCTCTTCTTTTAGGTTTGTTTAAGGATTACTTTCCT
GCTTTTTCTAGGGCGTGGATTCTATCCTTGGTTTTTTTTTTTTCTGTTAT
TATCCTTTGAAGGGCTGGATTCGTGGAAAGATAATGTGTGATTTTGTTTT
TGTCGGGGAAACTTTGGTTTCTCCATCTATGGGAATTGAAGG
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCTTTAGTCTATACTGACATTGAAAATTCTTAGCATT
TACTTTCCATTCCTTTGTGTGTGAGGAATCTTTGACAGTAACCTGTGTTT
TCATTCATATATTGATTCTCTTTCTCTCTCCTCCCCTCTTTTTCTCCCCT
CTCTCATTCTCATCGTAACGGTTACTTTTAGAAATCATGAACTCTGCCAT
TGCTTGTTACACAATTCTTTCTCAACTTTTGCTGGCCTTTCATCACTTCT
AATTTCTCTAGTTTTTATTTTTTGCACTGTCAAATCAAAGTTCTTCAAAT
AATTTTAGAATTCCAATTTAGCAGTCTTACTTTTTGTTTTGTCATAAATC
TAGCAATTTTATTTCTGTTGTATTGTTTCTATAGTTGCCCGTACTCAATA
ATTGTTTGCTTTGCTCGGTTAAGTCCAAATTTTATGATACATGCAGACTT
TTGCTTTTGAGACTTTAACTCAAATAAGAAGGTCTTATTATTCTTTAAAA
TATGACTTTCTATTTGGCAGGTACCATTATCCAATTTGTAAATAATCTGC
AAGATATGCAAATAAAAGCATATCTATATTTAGTCTTCTTGACACATTTA
TGTAAAATAGCTATGTTTCAGCCACAGAAGTTAACCTAGGGTTATAGAAA
TACCTTAACAATGCAACTTATATCTCCTGTGGGAGACCATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_o20.g1 MSMg01no478_o20.g1 CHROMAT_FILE:
MSMg01no478_o20.g1 PHD_FILE: MSMg01no478_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:45 2005
         (609 letters)



>mm_chr10_113548133_113549141
          Length = 1009

 Score = 1162 bits (601), Expect = 0.0
 Identities = 607/609 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctttagtctatactgacattgaaaattcttagcatttactttccattcctttgtgtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 cctttagtctatactgacattgaaaattcttagcatttactttccattcctttgtgtgtg 898

                                                                       
Query: 61  aggaatctttgacagtaacctgtgttttcattcatatattgattctctttctctctcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 aggaatctttgacagtaacctgtgttttcattcatatattgattctctttctctctcctc 838

                                                                       
Query: 121 ccctctttttctcccctctctcattctcatcgtaacggttacttttagaaatcatgaact 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 ccctctctttctcccctctctcattctcatcgtaacggttacttttagaaatcatgaact 778

                                                                       
Query: 181 ctgccattgcttgttacacaattctttctcaacttttgctggcctttcatcacttctaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ctgccattgcttgttacacaattctttctcaacttttgctggcctttcatcacttctaat 718

                                                                       
Query: 241 ttctctagtttttattttttgcactgtcaaatcaaagttcttcaaataattttagaattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ttctctagtttttattttttgcactgtcaaatcaaagttcttcaaataattttagaattc 658

                                                                       
Query: 301 caatttagcagtcttactttttgttttgtcataaatctagcaattttatttctgttgtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 caatttagcagtcttactttttgttttgtcataaatctagcaattttatttctgttgtat 598

                                                                       
Query: 361 tgtttctatagttgcccgtactcaataattgtttgctttgctcggttaagtccaaatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tgtttctatagttgcccgtactcaataattgtttgctttgctcggttaagtccaaatttt 538

                                                                       
Query: 421 atgatacatgcagacttttgcttttgagactttaactcaaataagaaggtcttattattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atgatacatgcagacttttgcttttgagactttaactcaaataagaaggtcttattattc 478

                                                                       
Query: 481 tttaaaatatgactttctatttggcaggtaccattatccaatttgtaaataatctgcaag 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 477 tttaaaatatgactttctatttggcaggtaccactatccaatttgtaaataatctgcaag 418

                                                                       
Query: 541 atatgcaaataaaagcatatctatatttagtcttcttgacacatttatgtaaaatagcta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atatgcaaataaaagcatatctatatttagtcttcttgacacatttatgtaaaatagcta 358

                    
Query: 601 tgtttcagc 609
           |||||||||
Sbjct: 357 tgtttcagc 349


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)