Query= MSMg01no479_c06.b1 MSMg01no479_c06.b1 CHROMAT_FILE:
MSMg01no479_c06.b1 PHD_FILE: MSMg01no479_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:01 2005
(698 letters)
>mm_chr10_54854709_54855806
Length = 1098
Score = 1168 bits (604), Expect = 0.0
Identities = 673/696 (96%), Gaps = 1/696 (0%)
Strand = Plus / Plus
Query: 4 ggaattcccctattttctcgtgtgtgttttcaaacattagttcacaaacaaatagtatac 63
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcccctaatttctcatgtgtgttttcaaacattagttcacaaacaaatagtatac 262
Query: 64 caggtgactaagggacaataagtaaccaatacaaaatcactggtgcatttaccacaagta 123
|||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct: 263 caggtgactaagagacaataggtaaccaatacaaaatcactgctgcatttaccacaaata 322
Query: 124 gaattatagcaccaccacagtgatgatgataatattataaaattaaataaaatgaggaaa 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaattataacaccaccacagtgatgatgataatattataaaattaaataaaatgaggaaa 382
Query: 184 tcacacaagcaggatttggaagactatagtagctagaaagtagaaaggcttcctataaaa 243
|||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 383 tcacgcaagcaggatttggaagactatagtagctagaaagtggaaaggcttactataaaa 442
Query: 244 tgctgtcttcagtttatgacatgcctgttgcactcatgaacatacaacacctgtgaccat 303
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgctgtctttagtttatgacatgcctgttgcactcatgaacatacaacacctgtgaccat 502
Query: 304 ttgtagaagcctatcacagagggacaagtagatggaaggggtacagtgataagaagaaag 363
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 503 ctgtagaagcctatcatagagggacaagtagatggaaggggtacagtgacaagaagaaag 562
Query: 364 gagtcaaaaggtatgtgagaaatggtaataggatgggaatatgatcttaatgcattattt 423
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 563 gagtcaaaaggtatgtgagaaatggtaataggatgggaatatgatcataatgcattattt 622
Query: 424 atgagtaatgaaaagtaaaaaa-aataaattaaaaaatatccaaactataacagaaaggc 482
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 623 atgagtaatgaaaagtaaaaaataataaattaaaaaatatccaaactataacagaaaggc 682
Query: 483 aaaagtatcatggcaagacagagcaacgaaactaagaaatcacgtgaaaatgtgtgtgat 542
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaaagtatcatagcaagacagagcaacgaaactaagaaatcacgtgaaaatgtgtgtgat 742
Query: 543 atttgtgacagaaagtgacatttgaagaattagtgtcatatttttttaactaatggaaga 602
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 743 atttgtgacagaaagtgacatttgaagaattagtgtcacatttttttaactaatagaaga 802
Query: 603 cataaatgtaaacttctttaaaagtctttgctagaataactaaaaagaaattcaacaatg 662
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 803 cataaatgtaaacttctttaaaagtctttactacaataactaaaaagaaattcaacaatg 862
Query: 663 aacttaatagcaaaacttctataaacaaaagacaaa 698
||||||| ||||||||||||| ||||||||||||||
Sbjct: 863 aacttaaaagcaaaacttctaaaaacaaaagacaaa 898
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space: 748544
Effective search space used: 748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_c06.g1 MSMg01no479_c06.g1 CHROMAT_FILE:
MSMg01no479_c06.g1 PHD_FILE: MSMg01no479_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:02 2005
(627 letters)
>mm_chr10_54991682_54992708
Length = 1027
Score = 1077 bits (557), Expect = 0.0
Identities = 566/569 (99%)
Strand = Plus / Minus
Query: 59 ttattctgcatggcttgctcaacctgtgtttttatagaacccaggattaccagcttaggg 118
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 ttattctgcgtggcttgctcaacctgtgtttttatagaacccaggattaccagcttaggg 968
Query: 119 atgataccacccacaatgggctaggctctcatccaacaatcactgattaaggaaattact 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 atgataccacccacaatgggctaggctctcatccaacaatcactgattaaggaaattact 908
Query: 179 tacaactggttcttatggagatattttctcaattgatttcctcctttctgatgcctctaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 tacaactggttcttatggagatattttctcaattgatttcctcctttctgatgcctctaa 848
Query: 239 cttgtgttttattgacataataatattcttcagacctgggagtattagaaaggggaatat 298
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 cttgtgtttcattgacataataatattcttcagacctgggagtattagaaaggggaatat 788
Query: 299 gagggtacaaataccctgatcagggcaatggaaaagaatgcagggcattttgggaagaga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gagggtacaaataccctgatcagggcaatggaaaagaatgcagggcattttgggaagaga 728
Query: 359 agagaggtcaatgtagaagaatggggagtggatcaagaggagtggaagaatacaaacaac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 agagaggtcaatgtagaagaatggggagtggatcaagaggagtggaagaatacaaacaac 668
Query: 419 cttatagaaaaagtgaaaaaggggtatacctgtggagagggaggcaggaagatgataaag 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 667 cttatagaaaaagtgaaaaaggggtatacctgtggagagggaggcaggaagaggataaag 608
Query: 479 aggaatgcaaatgttctcataaaggaactgtgaaaatggaggctctttaggtaaagggga 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aggaatgcaaatgttctcataaaggaactgtgaaaatggaggctctttaggtaaagggga 548
Query: 539 gggagataatgaagaagattggataagtaacaataaacttgtctggaaaagctacaagga 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gggagataatgaagaagattggataagtaacaataaacttgtctggaaaagctacaagga 488
Query: 599 attctactattaaatacttatacaaatgt 627
|||||||||||||||||||||||||||||
Sbjct: 487 attctactattaaatacttatacaaatgt 459
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
