BAC Information

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BAC

Clone NameMSMg01-479H04
Chromosome10 (Build37)
Map Location 19,434,344 - 19,434,649
singlet/doubletsinglet
Overlap geneIl20ra
Upstream geneD10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2
Downstream geneSlc35d3, Pex7, Map3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479H04.T7 (MSMg01no479_h04.b1)MSMg01-479H04.TJ (MSMg01no479_h04.g1)
ACCAG560326AG560327
length771781
length of high quality
(start - end)
535 (48 - 582)337 (75 - 411)
definitionCHROMAT_FILE: MSMg01no479_h04.b1 PHD_FILE: MSMg01no479_h04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:27 2005CHROMAT_FILE: MSMg01no479_h04.g1 PHD_FILE: MSMg01no479_h04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGGATTTCCAAGTAAAATGTCTGCCTGAGCACAGCTTTGTT
TAAAAGACAGAAGGGCCAGCCAGATGGCTTAGCAGGCAACTATGCTTGCT
ACCAAGTCTGATGTCCTAGGTTCAATCCCTGAAATCTATATAGGAAGAGA
AATCCAACTCCCACCAGTTGCCCTCTGATTTCCACAGGTGAGCCACGAAT
CATGCCCTTTTTCTACAATATTAAAAAAAAAGATAAATATAATTTTAAAA
ATCCTTAATAAAAAAAAAGGAAGAATCTTCCCCCTTTGTGCTGTGCCCTG
CACAGTCGACACAGAAGAAGGACTTTAAGATTGCATTTTATTTATTTGTT
TGTTTCTTTATTTGAGACACGCCCTCTACGTGTATCTTTGGCTGCCCTGG
AACTCGAGCTGTAGAGTGAGCTAGCCTCGAACTCACAGAGCTCTACCTGC
CTCTGCCTCCCAAATGCTGGGATTAAGGGTGTGTGCCACCACTGCCTACT
TTTTTGACTTTAAGAATTGTTTAAGGGACTAAGTTGGTGTTTTCTATTTC
CATGAACATTTATTCAGACTTTGCAGAGAAAATATTTCCATTATTTTCCC
CCAGAAGTTTATTGAATACTCTAAATCCACATGAACTTTTAAGCTGGGCT
CCCTTTTCATCCACTATATTTTCTGCTTATTTAATATTTATTCCCTGGGC
CCCTTAAGGGTGGATTGGTTT
NCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCTACAAAATTCCTCAGACAGCATGGCCCTGTTC
AACACCACAAAGGCTTCCATGGCTTTTGCAATTTTCTAAATCCTGCAGGG
TTCTGTGTGACCTGCCCCTCCTCCTCCTCCTCCTTCTTCCTTTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTG
TCTCTCTCTCTGTCTCTCTCTCTGTCTCTCTCTCTGTCTCTGTCTCTGTC
TCTGTCTCTGTCTCTCTCTCTTTTTCTTTCTCTCTCTCTCTCTCTCTCTC
TCCTTACTTTAATTACTCCCCTTCTTGCCTTTACCAAGTTCCCAGAGCAA
GCTAAATGTCCAGGAACCCCCCTCTTTCGTCTACCCTGGCTAACTCCACT
TCACTGTGTCTTCCCTTAATCTCCTAAATGGAAAGTCAGACTTTATAGGT
CTTAACTGGATACCCCACCCAACTGCTGCTTCTTTGATATATCCCTGCTA
CATCAGGGTTTAACTTCTTACCCGTCCCTTGTTTTGAGAAAGTCTCACAG
TAAACTCCATACCTAGACAGGCAAGATGTCCCCGCCCCCTGAATAAAAGG
GCTTTTATTATTTATTATAAAACGATGTTCCCTTTCTTTTCCTCCCCTTT
TCCCTTGTTGCCAATTCTTCCATCTTTATTACTCCTCCCATGTATAACCG
ACCTTTTTTGTTCTTCCACTCACGATATTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_h04.g1 MSMg01no479_h04.g1 CHROMAT_FILE:
MSMg01no479_h04.g1 PHD_FILE: MSMg01no479_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:27 2005
         (337 letters)



>mm_chr10_19434144_19434881
          Length = 738

 Score =  385 bits (199), Expect = e-111
 Identities = 296/337 (87%), Gaps = 31/337 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctcagacagcatggccctgttcaacaccacaaaggcttccatggcttttgcaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcctcagacagcatggccctgttcaacaccacaaaggcttccatggcttttgcaattt 260

                                                                       
Query: 61  tctaaatcctgcagggttctgtgtgacctgcccctcctcctcctcctccttcttcctttc 120
           |||||||||||||||||||| ||||||||||||||  ||||||||||||    |||  ||
Sbjct: 261 tctaaatcctgcagggttctatgtgacctgcccct--tcctcctcctcc----tcc--tc 312

                                                                       
Query: 121 tctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctc 180
            ||| ||| ||| ||| ||| ||| ||| ||| ||| ||| ||| || ||||||||    
Sbjct: 313 -ctc-ctc-ctc-ctc-ctc-ctc-ctc-ctc-ctc-ctc-ctccctttctctctg---- 357

                                                                       
Query: 181 tctctctgtctctctctctgtctctctctctgtctctgtctctgtctctgtctctgtctc 240
           ||||||||||||| ||||||||||| ||||||||||  ||||||||||  ||||| ||||
Sbjct: 358 tctctctgtctctgtctctgtctctgtctctgtctc--tctctgtctc--tctctctctc 413

                                                                       
Query: 241 tctctctttttctttctctctctctctctctctctctccttactttaattactccccttc 300
           ||||||    ||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 414 tctctc----tctctctctctctctctccctctctctccttactttaattactccccttc 469

                                                
Query: 301 ttgcctttaccaagttcccagagcaagctaaatgtcc 337
           ||| |||||||||||||||||||||||| ||||||||
Sbjct: 470 ttgtctttaccaagttcccagagcaagccaaatgtcc 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 109
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 738
Length adjustment: 9
Effective length of query: 328
Effective length of database: 729
Effective search space:   239112
Effective search space used:   239112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)