BAC Information

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BAC

Clone NameMSMg01-479J10
Chromosome10 (Build37)
Map Location 11,298,890 - 11,299,131
singlet/doubletsinglet
Overlap genenone
Upstream geneEG382450, Grm1, Shprh, Fbxo30, Epm2a
Downstream geneEG666732, LOC100039343, Utrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479J10.T7 (MSMg01no479_j10.b1)MSMg01-479J10.TJ (MSMg01no479_j10.g1)
ACCAG560432AG560433
length759748
length of high quality
(start - end)
299 (325 - 623)240 (76 - 315)
definitionCHROMAT_FILE: MSMg01no479_j10.b1 PHD_FILE: MSMg01no479_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:39 2005CHROMAT_FILE: MSMg01no479_j10.g1 PHD_FILE: MSMg01no479_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTCCTTCTGAGCCCCATTTTTTATTGGGGTTATTTGAT
TTTCTGGAGTCCACTCTCTTCAGTTCTCTCTATATATTGGATATTAGTCC
CCTATCTGATTTAGGATAGGGAAAGACCTTTTCCCAATCTGTTGGTGGCC
TTTTTGTCTTATTGATAGTATCTTTTGCCTTGCAGAAGCTTTGCAGTTTC
TTGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
CTGTTCAGGAATTTTTCTTTTGTTCCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGA
TCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGC
ATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAAT
GACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGG
TCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAATTGC
TCTGTAGTAAAGCTTTAGGTCAGGCATGGTCATTCTACCAGAGGTTCTTT
TATTCTTGAAAAAACGTTTTGCTATCCCAAGTTTTTTGTTATTCCCCAAG
AATATGCTA
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGTCAAAAACAATTCACCTGAAGTCATGACATTTTTTA
AAGTTCATAAGCCCTTTTTCTCCCAACTGGGCTTCTCTGTTCATTTGCTC
AGTATATTAATGAACCATGCTGCTTGCTGCTCACTGACATCAGAAAGAAC
ATACTTCATTGTTTTCTTGGATGATGATGATGATGACAAAGAAGAATATT
TTTACCTGGCCAGGAAATCATATGGGGAAAGAGCAGGCTGTAAAGTTAAG
GCACCAACAATGCTTTCGGTCAGTTAGATTGCCAAGCATCCATACTTCAC
TATAATAAATTTTTGTTATGTCATCGTGGTTATTGTTATATTGTTGTTGC
TTTGTGAGAGTGATGGCTTATTGTTTCTGAACAGTTGAAACTATCAAGCC
CACTGCAATCTCAGAGCCTTAATATAGCCCTATGCCTCATTGTCAATAGG
AAATGCAGAGCACTGATCAGCTGAGTAGTAAGTCTTTGAAGTTTAATTGA
TACTGTTTTCTACAGAGCAGCAGTACATGCTCTCAGCCTGCCCCACCCCC
AAGTGATTCCCACAACTATTTAAATGTTTAACGAACATAATTTTCTTTTT
TTTTATTTAGGATACTATACTCATTACTTTGAAGCTCTGGAGTTTTTACT
TTTAGGAAACCAAGGATGAACCACCTTTAACGCTTCTTTGCGTGCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_j10.g1 MSMg01no479_j10.g1 CHROMAT_FILE:
MSMg01no479_j10.g1 PHD_FILE: MSMg01no479_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:39 2005
         (240 letters)



>mm_chr10_11298690_11299331
          Length = 642

 Score =  408 bits (211), Expect = e-118
 Identities = 234/245 (95%), Gaps = 8/245 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacctgaagtcatgacattttttaaagttcataagccctttttctc-ccaactgggctt 59
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 442 tcacctgaagtcatgacattttttaaagttcataagccctttttctcaacaactgggctt 383

                                                                       
Query: 60  ctctgttcatttgctcagtatattaatgaaccatgctgcttgctgctcactgacatcaga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctctgttcatttgctcagtatattaatgaaccatgctgcttgctgctcactgacatcaga 323

                                                                       
Query: 120 aagaacatacttcattgttttcttggatgatgatgatgatgacaaagaagaa----tatt 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||     |  
Sbjct: 322 aagaacatacttcattgttttcttggatgatgatgatgatgacaaagaagaagaagaa-- 265

                                                                       
Query: 176 tttacctggccaggaaatcatatggggaaagagcaggctgtaaagttaaggcaccaacaa 235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 264 -ttacctggccaggaaatcatatggggaaagagcaggctgtaaagttaaggcaccaacta 206

                
Query: 236 tgctt 240
           |||||
Sbjct: 205 tgctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 642
Length adjustment: 9
Effective length of query: 231
Effective length of database: 633
Effective search space:   146223
Effective search space used:   146223
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)